Pseudomonas psychrophila: G5J76_04520
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Entry
G5J76_04520 CDS
T06988
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5J76_04520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsh03019
]
G5J76_04520
Enzymes [BR:
ppsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5J76_04520
Messenger RNA biogenesis [BR:
ppsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5J76_04520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QIE31560
LinkDB
All DBs
Position
1020174..1022027
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AA seq
617 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
EKLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACVFGGVGTN
PQVQALARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFRLPATHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGAV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIADGDLMGFDSSSVEAEKPEVRERPDVRNPRNTPRGPRGDGPGNPGGGG
GRKDKGKEKSKEKPAAARGERPAREQKPREAQPAREQRQPAPRSDANRAPDEFRDDDVDN
FGNRADYVSPYQNKNNQSRGRRPGAPAAGTGSGAAPAARTGGRQNAPRTGTGASTGTPPA
KRSGPRSGAPRDGQARRENRPARDDARQEPAVKGPRENQPKIMHKESKSDRFPTPEQLDQ
LPNRPRGEKPALLTRNR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccattgaagctgcgggc
tataccgagcctactccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgctcttccgatcctg
gaaaagctgtttcccaatggccacccggacaaatcccagcgccacggcccacgccaacca
cgcgtgctggtcctgactcctacccgcgaactcgccgcccaggtgcacgagagcttcaag
ctctatgcccgcgacctgaagttcgtcagtgcttgcgtgttcggcggtgtgggtaccaac
cctcaggtccaggctctggcccgcggtgttgacgtactggttgcttgcccgggtcggttg
ctcgacctggccggtcaaggcagtgttgacctgtcccacgttgaaatactagtgctcgac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaaaaaagtcctcgcgcgt
ctgccgtccaagcgtcaaaacctgctgttttcggcgacgttctccaaggacatcaccgat
ctggccggcaagctgctgcgtaacccggaacgtatcgaagttacgccacccaacaccacg
gttgagcgtatcgaacagcgcgttttccgtctgcctgccacccacaagcgtgccttgctg
gcgcacttgatcactgcaggcgcctgggaacaggttctggtctttacccgtaccaagcac
ggtgcaaaccgtttggccgagtacctggacaagcacggcctcagcgctgtggccatccac
ggtaacaagagccaaaacgcacgaaccaaagccctggccgacttcaaagccggtgccgtt
cgtattctggtagcgaccgatatcgccgctcgcggcctggatatcgatcagttgccacac
gtggtcaacttcgaactgccaaacgtcgatgaagattacgttcaccgtatcggccgtact
ggccgtgccggtcgttcgggtgaagcgatctcgctggttgctccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgacccgccagaaaatcgctgatggcgatctgatggggttt
gactccagcagcgtcgaggccgaaaagcctgaagtccgcgagcgtccggatgtacgtaac
ccgcgcaacacgccgcgcggtccacgtggcgacggtccgggtaacccgggcggtggcggc
ggtcgtaaagacaaaggcaaggaaaagagcaaagagaagccggctgctgctcgtggcgaa
cgcccagctcgtgagcaaaagccacgcgaagctcagcctgcccgtgaacagcgtcagcca
gcccctcgttcagacgccaatcgtgcgccggacgagttccgtgatgacgatgtggataac
tttggtaaccgcgctgattacgtcagcccgtaccagaacaaaaacaaccagagccgtggt
cgccgtccgggcgctcctgcagcgggcactggttcgggtgcagcacctgccgcgcgtacc
ggtggccgtcaaaacgccccgcgtaccggcaccggcgcgagcactggcaccccgccagcc
aagcgcagcggcccacgcagcggcgctccacgtgacggtcaggcccgtcgcgaaaaccgt
ccggcccgtgacgatgcccgccaagagccagcggttaaaggtccacgggagaatcagccg
aagatcatgcacaaagagtcgaaaagcgatcgcttcccgacgcctgagcagctcgatcaa
ctgccgaaccgccctcgtggcgagaagccggcactgctgactcgcaaccgctaa
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