KEGG   Pseudomonas psychrophila: G5J76_04915
Entry
G5J76_04915       CDS       T06988                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppsh  Pseudomonas psychrophila
Pathway
ppsh02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ppsh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    G5J76_04915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppsh03021]
    G5J76_04915
Transcription machinery [BR:ppsh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     G5J76_04915
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Rv2175c_wHTH HTH_24 HTH_17 Sigma70_ECF PhyR_sigma-like Sigma70_r3 HTH_3 HTH_31 FaeA MerR HTH_11 HetZ HTH_5 PCI
Other DBs
NCBI-ProteinID: QIE31637
LinkDB
Position
complement(1110740..1111264)
AA seq 174 aa
MSLSSVQNPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRPELQAPR
EPRAFLAAIAKGLLFDYFRRAALEQAYLNELMLIPEAEQPSPEVQQLILEDLKAIDRLLG
KLSSKSRAAFLHSRLDGLTHAEIAERLGVSVPRVRQYLAQGIRQCYIALYGEPV
NT seq 525 nt   +upstreamnt  +downstreamnt
atgtctttgtcgtcagtccaaaacccacacagtgagctggttggagcgctttaccgcgac
catcgcggctggctgctggcgtggttgcggcgcaacgtggcctgcccgcagcgggccgaa
gacctcagccaggacacttttgtgcgcctgctgggccgccctgaactgcaagctccccgt
gagcctcgggcattcctggccgccatcgccaagggcctgctgttcgactattttcgccgc
gccgcgctggagcaggcctacctcaacgagctgatgctgatccccgaggccgagcaaccc
tcgcccgaagtccagcaactgatccttgaagacctgaaggccattgaccgtctgctgggc
aagctgtcgagcaagtcccgtgcagccttcctgcacagccgtctcgatggcctgacccac
gcagaaatcgccgaacgcctaggcgtgtctgtgccccgtgtacgccagtatctggcccaa
ggtatccgccagtgctacatcgccctctatggcgaaccggtatga

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