Pseudomonas psychrophila: G5J76_06095
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Entry
G5J76_06095 CDS
T06988
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5J76_06095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsh03019
]
G5J76_06095
Enzymes [BR:
ppsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5J76_06095
Messenger RNA biogenesis [BR:
ppsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5J76_06095
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIE31853
LinkDB
All DBs
Position
1351714..1353051
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AA seq
445 aa
AA seq
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MTFATLGLIEPLLRALETLGYKTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTGGFALPLL
QSLTMEGPKVASNSVRALVLVPTRELAEQVHESIRQYAEHLPLSTYAVYGGVSINPQMMK
MRKGVDVLVATPGRLLDLYRQKAIKFNQLQTLILDEADRMLDLGFSEELRDIYRALPKKR
QTLLFSATFSDAIRLLAEQMLDNPLTIEVSPRNVAASSVKQWVIPVDKKRKAELFLHLLR
TQHWKQVLVFAKTRNGVDELVGKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGQKGEAISLVCADEVNMLSAIE
MLTRQTLKRHEEQDFEPEHRVPETDASGQVVKKPKKPKKPKTSGGGGKRNLGKWVDSGEA
APAEPSVKPVRKVPVFNTGPRKRKP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccacccttggcctgatcgaacccttgctgcgcgcccttgagacgctcggc
tacaagaccccaaccccggttcaggcccaagcgatccccgcagtactggctggccgcgac
ctgatggctgcagcccagacaggcaccggcaaaaccggcggtttcgccctgccgttgttg
cagtcgctgaccatggaaggcccgaaagtcgccagcaactcggtgcgcgcactggtgctg
gtgccgacccgtgaactggccgaacaggttcacgagagcattcgtcagtacgccgagcac
ctgccgttgagcacctatgcggtgtacggtggcgtcagcatcaacccgcaaatgatgaaa
atgcgcaaaggcgtcgatgtcctggtcgcaacgcctgggcgtttgctcgatctgtatcgt
cagaaggcgatcaagttcaatcaactgcaaaccctgatcctcgacgaagcggatcgcatg
ctcgatctcggcttctccgaagagctgcgcgacatttaccgtgcattgccgaaaaagcgc
cagaccctgctgttctcggccaccttttctgacgcgattcgcctgttggccgagcagatg
ctcgacaacccgctgaccattgaagtcagcccgcgcaacgtggccgccagcagcgtcaag
cagtgggtcatcccggtcgacaaaaagcgcaaggcagagctgttcttgcacttgctgcgc
acccagcactggaagcaggtgctggtgttcgccaaaacccgcaatggcgtggatgaattg
gtcggcaagctgcaaggtctggggatcaacgctgacggcattcatggcgacaagccacaa
gccacgcgtcaacgggcgctggatcgcttcaaggccagcgaagtacaaatcctggtggca
actgacgtcgccgcgcgcggtctggacattgaagacctgccgctggtggtcaacttcgac
ttgccgatcgtggccgaagactacattcaccgcattggccgtaccggtcgtgccggtcag
aagggcgaagccatttcgctggtctgtgctgacgaagtgaacatgctgtcggcaatcgag
atgctgacccgtcagaccttgaagcgccacgaagagcaagacttcgagccggagcaccgc
gtgcccgagacggatgcttctggccaggtggtcaaaaagccgaagaagccgaaaaagccg
aaaacctcaggcggtggcggcaagcgcaacctgggcaaatgggttgatagcggcgaagcg
gcaccggccgagccatcggtcaagcctgtgcgtaaagtacctgtgttcaacaccggtcct
cgcaagcgcaagccttaa
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