Pseudomonas psychrophila: G5J76_08095
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Entry
G5J76_08095 CDS
T06988
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ppsh
Pseudomonas psychrophila
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsh03021
]
G5J76_08095 (rapA)
Transcription machinery [BR:
ppsh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
G5J76_08095 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIE32218
LinkDB
All DBs
Position
complement(1786507..1789353)
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYSLRNAPLTRVRFSPG
DTIIHFEGWKMTVREVEDVDGLMVYHGLNEQNEAVTLPETQLSNFIQFRLASDRLFAGQI
DPLSWFSLRYHTLEHTSRQLQSPLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRANRVLIVVPENLQHQWLVEMRRRFNLEVALFDEERFIESDA
SNPFEDCQLALVALEWLVDDPKAQAALFDADWDLLVVDEAHHLVWHEDNVSPEYGLVEQL
AGVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAQAVQELLDK
GSLSPEAHQTIHGFLGAEGDTLLAAVNDGDAEASARLVRELLDRHGTGRVLFRNTRAAIQ
GFPERKLHAYPLPCPAEYLELPLGEHAELYPEVSFQSQPDASDEERWWRFDPRVEWLTDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSP
QQRLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEAADDHEWQALIDEARLERERLE
QELHTGRDRLLELNSGGSGEGEALVEAILEQDDQFTLPIYMETLFNAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELIYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAF
DTLNEQLESVPRASANKFVQAQRDQLTPKINAGEAKIAPRHAERVAEAQRRLAADTEEEL
ARLTALQAVNPSVRDSELVALRKQREQSLAMLEKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagcagagctaggt
ttaggcaccgttctggcacaggacggtcgcttgttgaccgtgctctatccggccactggc
gaaacccgccaatattcgctgcgcaacgcaccgctcacgcgtgttcggttctcgccaggt
gacaccatcatccacttcgaaggctggaagatgaccgtgcgcgaagtcgaggacgtcgac
ggcctgatggtctaccacggcctcaacgagcaaaacgaagccgtgaccctgccagaaacc
caactgtcgaactttatccagttccgtctggccagcgaccgtttgtttgccggtcaaatc
gatccgctgtcctggttctcgctgcgctaccacacccttgaacacaccagccgtcagctg
cagtcgccgctgtggggcctgggtggggtgcgtgcgcaacctattgcacaccaactgcat
attgcccgcgaagtggcagaccgtattgctccacgggttttgctggccgacgaagtaggc
ttgggcaaaaccattgaagccggcctggtcattcaccgccaactgctcagtggccgcgcc
aaccgcgtattgatcgtagtcccggaaaacctgcagcaccaatggctggtcgagatgcgt
cgtcgcttcaacctcgaagtggcgctgttcgatgaagaacgctttatcgaaagcgatgcc
agcaacccgttcgaagactgccaactggcactggttgccctggaatggctggttgacgac
cccaaggcgcaggctgcgctgtttgatgccgactgggacctgctggtggtcgacgaagcg
caccatttggtgtggcatgaagacaacgtcagccccgagtacggcctggttgaacagctc
gccggcgtaatcccgggcgtactgctgcttaccgcaacgccagagcaactgggtcaggac
agccactttgcgcgcttgcgcctgctggaccctaaccgtttccacgatctggccgcgttc
cgcgccgaaagcgaaaactatcgcccggtggctcaagccgttcaggagttgctggataaa
ggcagcctgtcacccgaagctcatcaaaccatccacggcttcctcggtgccgaaggcgat
accctgctggccgccgtcaatgatggcgatgcagaggccagcgcccgtctggtccgcgag
ctgcttgatcgccacggcaccggtcgcgtcctgttccgtaacacccgcgctgcgatccag
ggcttcccggagcgcaagctgcacgcgtacccgctgccgtgcccggccgaataccttgag
ctgccgctgggcgaacacgccgagctgtacccggaagtcagcttccagtcccagcctgat
gccagtgatgaagaacgctggtggcgctttgaccctcgggttgagtggctgaccgacacc
ctgaaaatgctcaagcgcaccaaagtactggtcatttgcgcccacgccgaaaccgctatg
gatctggaagacgccctgcgcgtgcgttccggcattcctgcaacggtcttccacgaaggc
atgaacattcttgagcgtgaccgcgcagcggcctacttcgcagatgaagagtttggcgcg
caagtgctgatctgttccgaaatcggcagcgaaggccgtaacttccagtttgcccaccat
ttggtactgttcgacctgccatcccacccggacttgctggagcagcgtatcggccgtctg
gaccgtatcggccagaagcacatcatcgaactgcacgtgccgtaccttgaaaccagcccg
caacagcgtctgttccagtggtaccacgaagcgctaaatgccttcctcaatacctgcccg
accggcaacgccctgcaacaccagttcggcccacgcctgttgccgttgcttgaagctgcg
gacgatcacgagtggcaggcactgatcgacgaagcgcgccttgagcgcgagcgtcttgag
caagaactgcacactggccgcgatcgcttgctggagcttaactccggcggctcgggcgaa
ggcgaagcgctggttgaagcgatccttgagcaagacgatcagttcaccctaccgatctac
atggaaaccctgtttaacgcctttggcatcgacagcgaagaccattccgagaacgcgctg
atcctgaagccaagcgaaaaaatgctcgacgccagcttcccgctgggcgacgacgagggt
gtgaccatcacctacgaccgcaaccaggccctgtcacgcgaagacatgcagttcatcacc
tgggaacacccgatggtgcaaggcggcatggacctcgtgctgtcaggctcgatgggcaac
accgccgtcgccctgatcaagaacaaggcgctcaagcctggcaccgtgttactcgagctg
atttacgtcagtgaagtggtagccccgcgttcactgcaactgggtcgctacctgccccct
gccgccctgcgctgcctgctcgatgccaacggtaacgacctgtcgtcccgcgtggctttc
gacaccctgaatgagcaactggaaagcgtgccccgtgcaagcgccaacaagttcgttcag
gcccagcgcgatcagctgacgcctaagatcaatgccggtgaagccaagattgcaccccgc
catgctgagcgcgtggccgaagcgcagcgccgtctggccgccgacaccgaagaagaactg
gcacgtctgaccgccctgcaagcggtcaacccaagcgttcgggacagcgaactggttgcc
ttgcgcaagcagcgtgaacaaagcctggccatgcttgaaaaagcagccttgcgccttgaa
gccattcgcgtgctggtagcgggttaa
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