Pseudomonas psychrophila: G5J76_09905
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Entry
G5J76_09905 CDS
T06988
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03030
DNA replication
ppsh03430
Mismatch repair
ppsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5J76_09905
03430 Mismatch repair
G5J76_09905
03440 Homologous recombination
G5J76_09905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsh03032
]
G5J76_09905
03400 DNA repair and recombination proteins [BR:
ppsh03400
]
G5J76_09905
Enzymes [BR:
ppsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G5J76_09905
DNA replication proteins [BR:
ppsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
G5J76_09905
DNA repair and recombination proteins [BR:
ppsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
G5J76_09905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
QIE32536
LinkDB
All DBs
Position
complement(2171455..2172177)
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AA seq
240 aa
AA seq
DB search
MKNLKKQPKNRVLDWSAEFETLAKISVNPLLQKFYQAGAVSALAPIESVQLLAMDVETTG
LDSQSHSIVSIGVMPFTLNRICCGNSLYWVIKPSSELNEKSVTFHHITHAEILDAPVFSQ
VLDPLLEAMAGRVIVVHYRNIERAFLDQAVRRYLGEGLKFPVIDTMQLEAHFHRQKISWF
GRLIGRKQESIRLADSRSRLNLPAYHAHHALTDALATAELLQAQIATHYSPLTPVGELWN
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctaaaaaagcagcctaaaaatagagtgctggactggtctgccgagttcgag
acattggcgaagatttcggttaatcctctattacaaaagttctatcaagctggcgcggtt
tcagcgctggcacccattgagagcgttcaactgctggccatggacgtagagactaccggc
cttgactcacagtcccacagcatcgtgagtattggtgttatgccgttcacgctgaatcgt
atttgttgcgggaattcactttactgggtgataaaaccatcgtccgaactgaatgaaaag
tcagtgacctttcatcacataacccatgccgaaattttagatgcccccgtgttttcgcag
gtgcttgatcctttgcttgaagccatggcgggcagagtgattgtcgtccattaccggaat
attgagcgcgccttcttggatcaggcagtgcgtaggtatttaggtgaaggccttaagttt
ccagtcatcgatacgatgcagttagaggcacacttccataggcaaaaaattagctggttc
ggccgactgattggacgcaagcaagagtccatacggctggcagacagtcgctctaggttg
aacctaccggcttatcacgcacatcatgcattaaccgatgctctcgcgactgccgagttg
ttgcaggcgcagatagcaactcactactcgccactcacacctgtcggtgagttatggaat
tga
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