Pseudomonas psychrophila: G5J76_10250
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Entry
G5J76_10250 CDS
T06988
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5J76_10250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsh03019
]
G5J76_10250
03009 Ribosome biogenesis [BR:
ppsh03009
]
G5J76_10250
Enzymes [BR:
ppsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5J76_10250
Messenger RNA biogenesis [BR:
ppsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5J76_10250
Ribosome biogenesis [BR:
ppsh03009
]
Prokaryotic type
rRNA helicases
G5J76_10250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QIE32598
LinkDB
All DBs
Position
2237730..2239403
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQHQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLTPLVADAESTHGDLLDRLIADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNSAPRERSSERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEVGLESLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagct
gtcatcgcgactggctacgaagaaccttcggctattcagcatcaatcgatcccgatcatt
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gcactgccgatcctgcaccgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgcctggtgttaccgttgtggccgtttacggcggcgcccctatgggtccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacttg
cgtcgtgacgaaaaagttctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaaactgggtttcatggacgatcttgaagttatcttcaaggctcttcctccaacc
cgccagaccgtgttgttctcggcaaccttgccgcagtctatccgtgccattgctgagcgc
catttgcgcgatccgcaacacgtgaagattcagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagttgaagatttcgacgccctgatcatgttcgtacgcaccaagcaagcgaccctggat
ctggccagcgcccttgaagccaaaggctacaaagctgctgcgctgaacggtgacattgct
cagaaccagcgtgagcgcgtaatcgactccctcaaggatggccgtctggacatcgttgtt
gcgaccgacgttgctgctcgtggtcttgatgttccacgtatcactcacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtactggccgtgcaggt
cgcgaaggtcgcgcactgctgctggtaactcctcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcaaaaggttgctgaagtccgcctgccggatgctcaagctgttctc
gatgcccgcatcaagaagttgaccaacagcctgacgcctctggttgctgacgctgaatcg
actcacggtgatctgctggatcgcctgattgccgatatcggttgcagcccacgtgctctg
gccgctgctctgctgcgcaaagcaaccaatggtcaggctctgactttggctgccatcgaa
cgtgaccgtccactggttcctaacagtgcaccgcgtgagcgttcatccgagcgttcgggt
gaccgtcctgatcgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggccgt
gctcgttgccgtaccgctctgggtgcgcgtgatggtatcgccgccaagaacctgctgggc
gctatcctcaatgagggtggcctggcacgtgaagcaatcggtcgcatccaggtgcgtgac
agcttcagcctggtagagctgccggaagtgggtctggaaagtttgctggccaaactgaaa
gacacccgcgttgctggcaagcagcttaagctgcgtcgctatcgcgaagattaa
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