Pseudomonas psychrophila: G5J76_10425
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Entry
G5J76_10425 CDS
T06988
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppsh
Pseudomonas psychrophila
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsh03032
]
G5J76_10425 (topA)
03400 DNA repair and recombination proteins [BR:
ppsh03400
]
G5J76_10425 (topA)
Enzymes [BR:
ppsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G5J76_10425 (topA)
DNA replication proteins [BR:
ppsh03032
]
Prokaryotic type
DNA Topoisomerases
G5J76_10425 (topA)
DNA repair and recombination proteins [BR:
ppsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G5J76_10425 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QIE32633
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Position
2278960..2281587
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AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKAQKQLISRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSRPGELDINRVNAQQARRFLDR
VVGYMVSPLLWAKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAK
VRFDVAREKGEAFKPLNEAQAMAALEKLKASNYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGYGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVEMARTYIEGEFGADYLPPAPN
VYSSKEGAQEAHEAIRPSDVNMHPSKLSGMERDAERLYELIWRQFVACQMLPAKYLSTTV
SVAAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVLKLIELDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSDLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAAAPDGGMRANQPVMT
DIPCKECGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
LGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGKSWKVEDKRKEKDA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagaaccggctgccaagcgtggcaaggcagcggcaggcgaa
gcgccggccctgtcgccaaaagagaaggctcaaaagcagctgatctcgcgcatgggcgtc
gatcccgaacatggctggaaagccaagtacgagatcctgcccggcaaggaaaaggtcatc
gaagagctgcgccggcttgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggagaagccattgcctggcacctgcgcgaagccatcggcggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagctttctccagg
cctggcgaactggatatcaaccgcgtcaacgcccagcaggcgcgtcgtttcctcgatcgc
gtggtgggctacatggtttcgccactgctgtgggcaaaagttgcccgtggcctgtcggca
ggccgtgtgcaatcagtagccgtaaagctggtggttgagcgtgagcgcgaaattcgtgcc
tttaaccctgaagagtactgggaaattcacgccgaccttggcactgccaagggcgccaaa
gtgcgtttcgacgtcgcccgtgaaaaaggcgaggcgttcaagccgctgaacgaagctcag
gccatggctgcgctggagaagctcaaggcttccaattacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgccattcattacctccaccctgcaacaggccgcg
agcaatcgcctggggtacggggtgaagaaaaccatgatgatggctcagcgcttgtatgaa
gcgggctacatcacgtacatgcgtaccgactccaccaatctgtcggccgatgccgtcgag
atggcgcgcacctacattgaaggtgagttcggcgcagactacctgccgccggccccgaac
gtgtatagcagcaaggagggtgcacaggaggctcacgaagcgattcgtccttcagatgta
aacatgcacccaagcaagctgtcgggcatggagcgcgacgctgagcgcctttatgagctt
atctggcgccagttcgtggcttgtcagatgctgcctgccaaatacctgtcgaccaccgtc
agcgtcgcggctggcgattttgagctgcgagccaagggccgcatcctgaaattcgacggt
tacacccgcgtgatgccacaaattgccaagccgggcgacgacgacgtactgccagatatg
gcacagggcgatgtgctgaaactgatcgagcttgatccaagccagcatttcaccaagcca
cctgcgcgttactccgaagccagcctggtaaaagagatggaaaagcgcggtattggtcgc
ccatcgacctatgcagcgatcatttcgactattcaggatcgtggttacgtggcgctgcat
aaccgccgcttctactccgaaaaaatgggcgatatcgtcaccgagcgcttgtccgagagt
ttctctgatctgatggactacggcttcactgccggcatggaagagaacctcgatgacgtg
gcgcaaggcgagcgtgactggaaaaacgtgctggacgagttctacggcgacttcaagaaa
aagctcgaagtagccgctgcgccggatggcgggatgcgtgccaatcagcctgtgatgact
gatattccgtgtaaagaatgtggtcgtccaatgcagattcgcacggcttcgactggcgtg
ttcctggggtgctcgggttacagcctgccgcctaaagagcgttgcaaggccacggtcaat
ctggtgccaggcgacgaaatcgcagcggacgatgaaggcgagtccgaatcgctggtgttg
ttgggcaagcaccgttgcccgatttgcagcacggccatggatgcttacctgctggatgag
aagcacaagctgcacatctgcggtaacaatccggattgcgtcggctatgaaattgaagaa
ggcaactaccgtatcaagggctatgaaggtccgagcctggagtgcgacaagtgcggcagc
gagatgcagctaaaaaccggccgcttcggcaagttcttcggttgcaccaacgccgagtgt
aaaaacacccgtaaattgctgaagagtggtgaagccgcaccgccgaaaatggacccggtg
aaaatgccggagcttaaatgcgagaaggttaacgacacgtatatcctgcgtgacggtgct
tcagggttgttcctggccgcgagccaatttccgaaaaaccgtgagacccgtgctccgttg
gtgatcgaaattgtgccgcacaaggacgagatcgatcccaagtatcacttcctgtgtgaa
gcgccgaagaaagaccctgatgggcgtcctgcggtgattcgctacagtcgcaaaaccaaa
gagcagtacgtgcagactgaagttgaaggcaagccgactggctggcgtgcgttctacgac
ggtaagagctggaaggttgaagacaagcgtaaagaaaaagacgcttga
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