Pseudomonas psychrophila: G5J76_19255
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Entry
G5J76_19255 CDS
T06988
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ppsh
Pseudomonas psychrophila
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppsh03009
]
G5J76_19255
Enzymes [BR:
ppsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5J76_19255
Ribosome biogenesis [BR:
ppsh03009
]
Prokaryotic type
rRNA helicases
G5J76_19255
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIE34275
LinkDB
All DBs
Position
complement(4260990..4262336)
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AA seq
448 aa
AA seq
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MFSDFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEQLNAGNLDLKEVEVLVLDEADRMLDMGFSEDVQRLVDECPNRQQTM
LFSATTGGSGLREMIGKVLNNAEHLQLNQVSQLNATTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNEGLAISLICHGDWNLMSSVER
YLKQSFERRTIKEVKGVYGGPKNVKASGKAVGVKKKKTDAKGVKKKSGAKAPTKRKIANR
PKTDALSLVSKDGMAPLKRRKPEAPAAE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgatttcgccctgcacgaacgcctgcttaaagctgtggccgagcttaaattt
gtcgagcctacgcctgtgcaagcagcggccatcccgctcgcgctcgaagggcgtgacctg
cgggttacagctcaaaccgggagtggtaaaactgccgctttcgtactgccgattctgaat
cgtctgattggtccagccaaaatccgcgtaagtatcaaagcgttgattttgctgccgacc
cgcgagctggcacaacaaacgctcaaggaagttgagcgcttttcgcagttcacgttcatc
aagtccggcctgatcaccggcggtgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggatatcctgatcggcaccccgggtcgtttgctggagcaactgaacgccggcaac
ctcgacttgaaagaagttgaagtgctggtactcgacgaagccgaccgcatgctcgacatg
ggcttctccgaagacgttcagcgtctggtcgacgagtgccctaatcgccagcagaccatg
ctgttctcggccaccaccggtggttcgggtctgcgcgagatgatcggcaaggtgctgaac
aatgccgagcacttgcagctcaatcaggtcagccagctgaacgcaacgacgcgtcagcaa
atcatcacggccgaccacaaccagcacaaagagcaaatcgttaactggttgctggctaac
gagacgtatcaaaaagctatcgttttcaccaatacccgcgccatggcagaccgtatctac
ggtcgtttggtcgctcaggactacaaggcgtttgtcttgcatggtgagaaagaccagaaa
gatcgcaaattggccatcgatcgcctgaagcagggcggcgtcaagattctggtggctact
gacgttgcagcccgtggtctggacgttgaaggcctggatctggtgatcaacttcgatatg
ccacgcagcggcgacgaatacgtacaccgtattggtcgtacgggtcgtgcgggtaacgaa
ggcctggcgatttcgttgatctgccacggcgactggaacctgatgtccagcgttgagcgc
tacctgaagcaaagcttcgagcgccgcaccatcaaggaagtcaaaggcgtttacggcggt
ccgaaaaacgttaaggcctcgggtaaagctgttggtgtgaagaagaagaaaactgacgcc
aagggtgtcaagaagaagtcgggcgccaaggcaccgaccaagcgcaaaatagccaaccgc
ccgaagaccgacgccctgtcgctggtcagcaaggacggcatggctccgctcaagcgccgt
aagccagaagcgccggctgctgaataa
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