Pseudomonas psychrophila: G5J76_21895
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Entry
G5J76_21895 CDS
T06988
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03410
Base excision repair
ppsh03430
Mismatch repair
ppsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
G5J76_21895 (recJ)
03430 Mismatch repair
G5J76_21895 (recJ)
03440 Homologous recombination
G5J76_21895 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsh03400
]
G5J76_21895 (recJ)
DNA repair and recombination proteins [BR:
ppsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
G5J76_21895 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
G5J76_21895 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G5J76_21895 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QIE34760
LinkDB
All DBs
Position
complement(4849370..4851079)
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AA seq
569 aa
AA seq
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MRIEPRPLPETLPFLGEMPTLLTRLYAARGVQSQAELDKSLARLIPYQQLKGIDAAVDLL
VVALEQRQRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALTRTPQLLITVDNGISSIEGVAAAKKAGLSVLVTDHHLPGNELPAADAIVNPNQPGCGF
PSKALAGVGVIFYVLIALRARLNSLGWYQNSKAPNIAELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVAKRDHSKITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLTDDANAAQAMAVQLDEMNQDRKSIEQGMQREALAQLKDLALESMPFGLCLFDPEWHQG
VIGILASRLKERYFRPTFAFADAGDGMLKGSGRSVPGFHIRDALSVVAAQHPELISKYGG
HAMAAGLTLPEANFTLFSQAFDAEVRRQLREEDLTGRMLSDGSLAVEEFHLELARALRNA
GPWGQHFPEPLFHGVFQLVEQRIVGERHLKVVLKTECGSVKLDGIAFGIDREVWPNPTIR
WVELAYKLDLNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaacctcgtccactgcctgaaaccctgccttttttgggcgaaatgccaacc
ctgctgacgcgtctatacgcggcacggggtgtgcagtcgcaagctgagctggacaagagc
ctggcgcgacttatcccgtatcagcagctcaagggcatcgatgcggccgtggatttgctg
gtggtggcgcttgaacagcgccagcgcatcttgatcgtgggcgactttgacgccgacggc
gcgacggcgagtacggttggcatgctgggtttgcgcttgctgggagcggcccatgtcgat
tatctggtgccaaaccgctttgaatacggctatggcctgaccccggaaatcgtcgaggtc
gcgctgacacgtacccctcagttgctgattacggtcgacaatggaatctccagtattgaa
ggcgtggccgcggcaaaaaaagccgggttgagcgtactggttacggatcaccacttgccg
ggcaacgaattgccggcagcggacgccatcgtcaaccccaaccagcccggctgcggattt
ccgagcaaggcgctggcaggggtaggggtcatcttttacgttctgatcgccttgcgggcg
cgcttgaacagcctgggctggtaccagaacagtaaggcgccgaacatcgccgagctactg
gacctggtggcgctgggcagtgtggcggacgtggtgccgctggatgccaacaatcgcatt
ctggtacatcaggggcttgagcgaatccgtgccgggcgcgcgcgcccggggctaaaggcc
attttggaggtggccaagcgtgaccactcaaaaatcacctcgaccgatctgggattcatt
ctggggccgcgcctaaacgctgccgggcgactggacgacatgagtctgggtatcgaatgc
ctgctgaccgatgacgccaatgcggcgcaggcaatggccgtgcagctggacgagatgaat
caggaccgcaaatccattgagcagggcatgcaacgtgaagcgctggcccagctcaaggac
ctggcgctagagagcatgccgtttggcctgtgcctgttcgacccggagtggcatcagggg
gtgatcgggattctggcttcgcgactcaaggagcgttacttccgcccgaccttcgcgttt
gccgatgcgggcgatggcatgctcaaggggtccgggcgttcggtgccgggttttcatatc
cgggatgcgctcagcgtggttgctgcccagcatccggaattgatcagcaagtacggcggc
catgccatggcagccggcttgaccttgcctgaggccaacttcacgctgttttcccaggca
tttgatgccgaagtccgacgtcaactccgtgaagaagaccttactggacgcatgctgtcc
gacggcagtctggcagttgaagaatttcatctggagctggcgcgagccctgcgcaatgcc
gggccgtggggacagcatttcccggagccgttgtttcacggggtgttccagttggttgag
caacgcatcgtgggtgagcggcatttgaaagtggtgctcaaaaccgaatgcggcagcgta
aaactcgatggcatcgccttcgggattgaccgcgaagtgtggcctaacccgaccattcgc
tgggttgaactggcctataaactcgacctcaacgagtttcgcggcaacgaaaccgtgcaa
ctgatgattgctcatatcgaaccgcgttaa
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