Pseudomonas oryzihabitans PRS08-11306: BJP27_01685
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Entry
BJP27_01685 CDS
T05074
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BJP27_01685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsl03021
]
BJP27_01685
Transcription machinery [BR:
ppsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJP27_01685
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
APQ10278
LinkDB
All DBs
Position
complement(361907..362419)
Genome browser
AA seq
170 aa
AA seq
DB search
MASAALERADLLTQIFQSDYRWLTERLRYRLGCRFNAEDVASESFLHLSTLPGLNEVREP
RAMLTTIANRVMYEVSRRRALEKAYLEALSFAPEHVMPSPEEQHLLLETLVAIDKALEGL
STKARKAFFYSQLDGMTYAQIGVELGVSASMVRQYMTQALTRCYAITAES
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgctgcgttggaaagagccgacctgctgactcagatttttcagagcgattat
cgctggttgaccgagcgcctccgctatcgactgggctgccgattcaatgctgaggatgta
gcgtctgagtcgttcctgcacctttccacgctgcccggcttgaacgaggtgcgcgaaccg
cgcgctatgctgaccactatcgccaaccgcgtgatgtatgaggtctcgcgccgccgcgcc
ctggaaaaggcctatctggaggcgttgtccttcgcccccgaacatgtcatgccgtcgccc
gaagagcagcacctcctgctggaaaccctggttgcgatcgacaaagccctggaaggcctg
tccacgaaggcacgcaaggcgttcttctacagccagctggatggcatgacctacgcgcaa
attggcgttgaactgggcgtatcggcgagtatggtgcgccagtacatgacccaggcgctg
accaggtgctacgccattaccgcggagagttga
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