Pseudomonas oryzihabitans PRS08-11306: BJP27_02860
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Entry
BJP27_02860 CDS
T05074
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsl03032
]
BJP27_02860
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_02860
Enzymes [BR:
ppsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BJP27_02860
DNA replication proteins [BR:
ppsl03032
]
Prokaryotic type
DNA Topoisomerases
BJP27_02860
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BJP27_02860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
APQ10496
LinkDB
All DBs
Position
641512..642609
Genome browser
AA seq
365 aa
AA seq
DB search
MQRLAQTDLPVPTDERDDTGTALCTPLPPDLNYVDDRQPGLSRRKLRGKWAYFTADGERI
RDQAEVERINKLAIPPAYTDVWICPDANGHLQATGRDARGRKQYRYHPRWREIRDTDKYE
RMLAFGQALPKLRQRVEEDLNRRGLCREKVMATVISLLDATLIRVGNAQYAKSNKSYGLT
TLRNRHAEVHGSTIAFHFRGKSGVEHDVKVSDPRLARTVKKCLELPGQHLFQYVDADGER
HTVTSSDVNAYLHELTGADFTAKDYRTWAGSALALEALRELRCETQTEAKKELVDMVKAV
SRTLGNTPAVCRKCYIHPGVLDAFLAGDLGTLPRPRKRKGLKEEEVLLLNFLQRLEQRVA
ETQAA
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcctcgcccagaccgatctacccgttcccaccgatgagcgcgacgacaccggt
accgccctttgtacccccttgccacccgatctcaactacgtcgacgaccgccaacccggt
ctcagccggcgcaagctgcgcggtaaatgggcctacttcaccgcggacggcgagcgtatc
cgcgaccaggcggaggtggagcggatcaacaagctggccatcccgccggcctataccgat
gtctggatctgcccggatgccaatggccatctccaggccacgggtcgcgacgcccgtggc
cgcaagcagtatcgctaccacccgcgctggcgcgagattcgcgacaccgataagtacgag
cggatgctcgccttcggccaggctttgccgaagctgcgccagcgcgtggaggaagacctc
aatcgccgtggtctgtgccgggagaaggtcatggccacggtgatcagcctgctggatgcg
acgctgatccgggtcggcaacgcccagtacgccaagagcaacaaatcctatggcctcacc
accctgcgtaatcggcatgccgaggtgcatggcagcaccatcgccttccacttccgcggc
aagagcggtgtggaacacgatgtgaaggtgagcgatccccgcctggcacgcacggtgaag
aagtgcctggagctccccggccagcacctgttccagtacgtggatgccgacggcgagcgg
catacggtgacctcctccgacgtcaatgcctacctgcacgagctgaccggcgccgacttc
accgccaaagactaccgcacctgggcgggtagtgccctggccctggaagcgctgcgcgag
ctgcgttgcgagacccagaccgaagccaagaaggaactggtggacatggtcaaggcggtg
tcgcgcacgctgggcaacaccccggcggtttgccgcaagtgctacatccaccccggcgtg
ctcgatgcctttctcgccggggatctcggcaccctgcccagaccgcgcaaacgcaagggg
ctcaaggaggaagaggtgttgctgctcaacttcctccagcgcctggagcagcgcgtggcg
gagactcaggcggcctga
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