KEGG   Pseudomonas oryzihabitans PRS08-11306: BJP27_04595
Entry
BJP27_04595       CDS       T05074                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ppsl  Pseudomonas oryzihabitans PRS08-11306
Brite
KEGG Orthology (KO) [BR:ppsl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppsl03400]
    BJP27_04595
Enzymes [BR:ppsl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BJP27_04595
    5.6.2.6  RNA 3'-5' helicase
     BJP27_04595
DNA repair and recombination proteins [BR:ppsl03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BJP27_04595
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr Cas3-like_C_2 ResIII AAA_25 PhoH
Other DBs
NCBI-ProteinID: APQ10817
LinkDB
Position
complement(1036219..1040562)
AA seq 1447 aa
MTSISPAAAFLAEFHDAPLSWFRGRFPAPTEAQRQAWPAIRAGESVLVAAPTGSGKTLTA
FFAVLDGLVQEALRDGGLPEACLWLYVSPLKALSNDIRLNLEEPLAGIGAALEARQLPPL
QLRTAVRTGDTPQKERAAMRRRPPHLLVTTPESLYVLLGSDSGRRMLASVRGVIVDEIHA
IADGKRGSHLTLSLARLEALTGRALQRIGLSATQKPLAAVAAFLVGRDAQGRPRPCTVID
IGHQRARDLALEVPPIPLEAMLSTQAWELVYDRLAELAEGHRTTLVFVNTRRLAERMARQ
LSDRLGSELVAAHHGSLAKEQRLDAEQRLKRGELRLLLATASLELGIDIGDVDLVCQIGS
PGSIAAFLQRVGRANHQVGGLPKGRLFPTSRDDLVECVALLDCVRRGELDTLHIPRAPLD
VLAQQLVAEVACQEWSEAALLAVLRQAEPYAELSEADYSSVVAMLSQGYTDRRGPRAAYV
HRDAVNGLLRGRRGGKATAVMSGGTIPESGDFSVLLEPQGHTVGSVNEDFAFESLVGDVF
QLGNTAYRIVKIEGSKVRVEDAKGQPPNIPFWHGEAPGRSDELSAGLARLRAELEPLLPA
AGEAPEPAIERIGAAYELDEGAARQLVDYLGRTRQVLGALPTQQTLVMERFFDQAGGMQL
IIHAPFGSRINRAWGLALRKRFCRNFNVELQAAATENALILSLATSHSFVLDEVWRYLHP
ATAEQVLIQALLDAPLFAVRWRWNATTALALPRFSGGRKVATQVQRMRSEDLLATVFPDQ
VACLENLAGERQVPEHPLVRQTLDDCLHESLDSRGWLALLERISTGQLTLLTRDLPGPSP
LAAEVLTAKPYAYLDDASVEERRTLAVQNRRFGGADPGDLGALDPAAIALVREEAWPRLE
TADELHEALLGVGFLTEAEMASHLAQARQLSKAGRAGRLRLPETTLWIAAERLPLFQSLF
PAAPIEPALAAPSGFVAPEDAEAALVEVLRARLTALGPIAQAELAASLGLPPERLTPALL
ALQGEGYVLQGHFTAETQTVEWCERHLLARIHRYTLGRLRKAIEPVALADYLRFLLEHHH
LAGPATLRGGEGLEQVVGLLEGFEVAAAGWEGEILPSRLPGYLFTGLDDLCRAGRVVWLR
LPLPGRHGGGPVKSSPIVLLPRRHLADWNSLTTPPTGETLSPKAQRVLEVLTRRGASFFD
ELLGEARLLRSELEIALGELVGAGAINADSFAGLRALLLPAAKRVNRTGLRRGRMPLYGG
MDDAGRWAALRPAEPLADARLPDALLERLVWVLLRRYGVLCWQVLQRESEVLPPWRDLLR
ACHRLEARGEIRGGRFIAGLSGEQFADPAAIAPLREWRQRPADDTWVSVSALDPLNLVGT
LLPGAKVPAVLGNRLLYRDGVPIAARIGTTCKWLVELSPEDQARARQALLQLGRERPRIG
ALGSLLP
NT seq 4344 nt   +upstreamnt  +downstreamnt
atgacctcgatctcgcctgctgccgctttcctggcggagtttcacgatgcgccccttagc
tggttcagggggcgttttcccgcgccgaccgaggcgcagcgccaggcctggccggccatc
cgtgccggtgaatcggtgttggtggccgcgcccaccgggtcgggcaagacgctgaccgcc
ttcttcgccgtgctcgacggcctggtgcaggaggcgttgcgcgacggcggcctgcccgag
gcctgcctctggctctatgtgtcgccgctcaaggcgctgtccaacgatatccgcctcaac
ctcgaagagcctttggccgggatcggtgccgccctggaggcgcgtcagttgccgccgctg
cagctgcgcaccgcggtgcgtaccggcgataccccgcaaaaggaacgcgccgccatgcgg
cggcgaccgccgcacctgctggtcaccacgcccgaatccctctatgtgctgctcggctcg
gattccggacggcggatgctggccagcgtgcgcggcgtcatcgtcgacgagatccatgcc
atcgccgatggcaagcgcggcagtcatctcaccctgagcctggcgcgactggaagccctc
accgggcgagccctgcaacgcatcggcctgtccgccacccagaagccgctggcggcggtc
gccgccttcctggtcgggcgcgacgcccaggggcggccgcggccctgtacggtgatcgac
atcggccaccagcgcgcccgcgacctggccctggaggtcccgcccatccccctggaggcg
atgctctccacccaggcctgggagctggtctacgaccgcctcgctgaattggccgaaggg
catcgcaccaccctggtgttcgtcaacacccgccgcctggccgagcgcatggcgcggcag
ctgtcggatcgcctcggcagcgagctggtcgccgcccaccacggcagtttggccaaggaa
cagcggctggacgccgaacagcgcctcaagcgcggtgaactgcgcctgctgctggcgacc
gcctccctggagctgggcatcgatatcggcgatgtcgacctggtctgccagatcggctcg
ccgggctccatcgccgccttcctgcagcgcgtcggacgtgccaatcaccaggtgggcggc
ctgcccaaggggcggctgttccccacctcgcgggacgacctggtggaatgcgtggcgctg
ctcgattgcgtgcgtcgcggtgagctggacaccctgcacatcccccgggcgcccctggac
gtactggcccagcaactggtggccgaggtggcctgccaggaatggtcggaggcggccctg
ctggcggtgctgcgccaggccgaaccctatgccgaactgagcgaggcggactacagttcc
gtggtggcgatgctcagccagggctacaccgatcgccgtggcccgcgggcggcctacgtg
caccgcgatgcggtcaacggcctgctgcgcggtcggcgtggcggcaaggccacggcggtg
atgagtggtggcaccatcccggaaagcggtgacttcagcgtgctgctcgaaccccagggc
cataccgtgggcagcgtcaacgaggatttcgccttcgaaagcctggtcggcgatgtcttc
cagctgggcaataccgcctaccgcatcgtcaagatcgaaggcagcaaggtgcgggtcgag
gatgccaaggggcagccgcccaacattcccttctggcatggggaggcaccggggcgtagc
gacgaattgtcggctggtctcgcccgcctgcgagcggaactggaacccctgttgcccgcg
gcgggtgaggcccctgaacccgctatcgagcggatcggcgcggcctatgaactggacgag
ggcgctgcccgccagttggtggactatctcggccgcacgcgccaggtcctgggtgcgtta
ccgacccagcagacgctggtgatggagcgcttcttcgaccaggccggcggcatgcagctg
atcatccacgcgccctttggcagccgcatcaaccgcgcctggggcctggcgctgcgcaag
agattctgccgcaacttcaatgtcgagctacaggcggcggccaccgagaacgccctgatc
ctgtcgttggccaccagccacagcttcgtgctcgatgaggtctggcgctatctgcatccg
gccaccgcggagcaggtgctcatccaggccctgctggacgcaccgctgttcgccgtgcgc
tggcgctggaacgccaccacggcgctggccctgccgcgcttcagcggcgggcgcaaggtg
gccacccaggtgcagcgcatgcgcagcgaagacctgctggccacggtctttcccgaccag
gtcgcctgcctggaaaacctcgccggcgagcgccaggtgccggagcatcccctggtgcgc
cagaccctggatgactgcctgcacgaatccctcgacagcaggggttggctggcactgctg
gagcgcattagcacaggccaactgaccctgctgacgcgcgatctgcccgggccgtcgcca
ctggccgccgaggtgctgacggccaagccctacgcctacctggacgatgcctcggtcgag
gagcgccgtaccctggcggtacagaatcggcgcttcggcggtgccgatcccggcgacctc
ggtgccctggatccggcggccatcgctctggtccgggaggaagcctggccgcggctggaa
acggccgatgagctgcatgaagctctgctgggcgtgggctttctcaccgaggcggaaatg
gcgtcccacctggcccaggccaggcagttgagcaaggccgggcgagccgggcgcctgcgg
ctgccggagacgaccctgtggatcgccgcggagcgcctgccgctgttccagagcttgttt
cccgcggctcccatcgagcccgctctcgctgcgccgtccggtttcgtcgcgcccgaggat
gccgaggcggcactggtcgaggtgttgcgcgcgcgcctgaccgccttggggccgatagcc
caggcagagctggcggcgagcctcggcctgccgccggagcgtctcactccggcgttgctg
gcgctgcaaggcgagggctatgtattgcaggggcatttcaccgccgagacccagacggtc
gaatggtgcgagcgccatctgctggcacggatccatcgctataccctgggccgcctgcgc
aaggccatcgagccggtggcgctggccgactacctgaggttcctgctggagcaccatcac
ctggctgggccggcaaccctgaggggaggcgagggcctggagcaggtcgtcggcctgctg
gagggcttcgaggtcgccgccgccggttgggaaggtgagatcctgcccagtcgcttgccg
ggttacctctttaccgggctcgatgacctctgccgggccgggcgggtggtctggttgcgc
ttgccgctgccgggccgccatggcggcggaccggtcaagagttcacccatcgtcctgttg
ccgcggcggcatctggccgactggaacagcctgaccacaccgcccacgggcgagacactg
tcacccaaggcgcaacgggtgctggaggtactgacccgtcggggcgcctccttcttcgac
gaactccttggcgaagcgcgcctgttgcgcagtgaactggagatcgccctgggcgagctg
gtcggtgccggcgcgatcaatgccgacagtttcgccgggctgcgcgccctgttgctgccg
gcagccaagcgcgttaaccggaccggcctgcgccgcggccggatgccgctctatggcggt
atggacgatgccgggcgctgggctgccctgcggccggccgagccactggccgacgctcgc
ttgcctgatgccctgctggagcgactggtctgggtattgctgcgccgttatggcgtgctc
tgctggcaggtgctgcaacgcgagagcgaggtgctgccgccctggcgcgatctgctgcgt
gcctgccaccgcctggaggcccgcggcgagatccgtggcggtcgcttcatcgccggcctt
tccggtgagcaattcgccgaccctgcggccatcgccccgctgcgggaatggcgccagcgc
ccggcggacgacacctgggtcagcgtctcggcgctggacccgctcaatctcgtcggcacc
ctgctaccgggtgccaaggtgccggccgtcctgggcaatcgactgctttatcgcgatggc
gtacccatcgccgcgcggatcggcacgacatgcaaatggctggtggagctgtcgcccgag
gatcaggcacgggcgcggcaggcgctgctgcaactggggcgagagcggcccaggatcggc
gctctgggtagtcttctaccctag

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