Pseudomonas oryzihabitans PRS08-11306: BJP27_04975
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Entry
BJP27_04975 CDS
T05074
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP27_04975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsl03019
]
BJP27_04975
Enzymes [BR:
ppsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJP27_04975
Messenger RNA biogenesis [BR:
ppsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP27_04975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APQ10887
LinkDB
All DBs
Position
1131503..1132813
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AA seq
436 aa
AA seq
DB search
MTFADLGLIDPLLQALTALEHSSPTPIQRQAIPAVLAGRDLLAAAQTGTGKTGAFGLPLL
QRLVQEGPAVAPNHIRALILTPTRELAEQVHASLRDYAQHLPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLFNQNAVRFDQVQVLVLDEADRMLDLGFSRQLGELFVMLPRKR
QTLLFSATFSDAVRQLAAPVLRDPQTLDVSPRNTAAVTVKQWVIPVDKKRKTELFLHLYR
SGRRQQVLVFAKTRKGVEQLVEALQAEGLAAESIHGDKPQPARLRALARFKAGEADILVA
TDVAARGLDIQDLPLVVNLDLPIVAEDYVHRIGRTGRAGNQGQAVSLVCADEVEQLAAIE
TLIGQILMRRDEPDFIPDHRVPQTGPGGLVMKKPKKPKKPKVGAPVSDKPLGRWVEDGKP
KVKSVRKAPGFGKPRK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgccgacctcggcctcatcgatcccctgctgcaggcgctcaccgccctggag
cacagctcccctactcccattcagcgccaggcgatcccggcagtgctggccggtcgcgat
ctgctggccgcggcccagaccggtactggcaagaccggcgccttcggcctgccgttgctg
cagcggctggtgcaggaaggcccggcggtggcgcccaatcacatccgcgccctgatcctc
acccctacccgcgaactggccgaacaggtccacgccagcctgcgtgactatgcccagcac
ctgccgctgcgtaccgccgtggcctatggtggcgtcagcatcaatccgcagatgatgaag
ctgcgcaagggcgtggacgtgctggtagcgaccccggggcgcctgctcgacctgttcaac
cagaacgccgtgcgcttcgaccaggtgcaggtgctggtgctggacgaagccgatcgcatg
ctcgacctgggcttttcccggcagttgggcgagttgttcgtcatgctgccgcgcaagcgc
cagaccctgctgttctcggcgaccttctccgatgccgtgcgccagctggccgcgccggta
ctgcgcgatccacagaccctcgacgtcagtccgcgcaacaccgccgccgtcaccgtcaag
cagtgggtgataccggtcgacaagaagcgcaagaccgagctgttcctgcacctctatcgc
agcggccgccgccagcaggtgctggtattcgccaagacgcgcaagggcgtcgagcaactg
gtggaagccctgcaggccgaaggcctggcggcggagtccatccatggcgacaagccccag
cccgcccggctgcgcgccctcgcccgcttcaaggccggcgaggcggacatcctggtggct
accgacgtcgccgctcgtggcctggatatccaggatctgccgctggtggtcaacctggat
ctgcccatagtcgccgaggactacgtccaccgcatcggtcggaccgggcgcgcgggcaac
cagggccaggcggtgtcgctggtctgcgccgatgaagtcgagcagttggcggccatcgag
accctgatcggccagatcctcatgcgccgcgacgagccggacttcattcccgaccaccgc
gtcccccagaccggcccgggcggactggtgatgaagaagcccaagaagccgaagaaaccc
aaggtcggcgcgccggtgtccgacaagccgctgggtcgctgggtggaagacggcaagccc
aaggtcaagtcggtgcgcaaggcgcccggcttcggtaagccgcgcaagtaa
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