Pseudomonas oryzihabitans PRS08-11306: BJP27_07535
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Entry
BJP27_07535 CDS
T05074
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP27_07535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsl03019
]
BJP27_07535
03009 Ribosome biogenesis [BR:
ppsl03009
]
BJP27_07535
Enzymes [BR:
ppsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BJP27_07535
Messenger RNA biogenesis [BR:
ppsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJP27_07535
Ribosome biogenesis [BR:
ppsl03009
]
Prokaryotic type
rRNA processing factors
BJP27_07535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APQ11358
LinkDB
All DBs
Position
1675399..1678683
Genome browser
AA seq
1094 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGAD
RHGFLPLKEISREYFKKNPEGRVNIKEVLSEGQEVVVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLDAPGDMGLIVRTAGLGRSTEELQWDLD
YLLQLWSAITEASGERKGPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALSFIR
QVMPQYASKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPVKNQRAVEDRVREA
LEADRARVQIGRISRFGLLEMSRQRLRPSLRETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRAHVPIQVASFLLNEKRNSITKIELRTRVRIIILPDDHIETPHFEVQ
RLRDDNPELLNSQSSYEMANTEAEEVLPVSSTRTLVRQEAAVKVAPERAPAPVSTTAEVV
TPAAPVAAKPAAEPNLFKGLVKSLVSLFAGKTEEQPLADKTATTPATTKSSDEQRRQDER
RNGRQQNRRREGRRDDERKPREERQPRAERGERSERPTREERKPREERQPREDRQPREER
ASREERQPREERQPREERANREERQPREERQPREERASREERQPREERQPREERAVREER
QPREERQPSEERLSAEERPAREERQPREERKPREERQPREERKAREERQAAASAEELNEE
EVLEGNDELEEGEERPRRRSRGQRRRSNRRERQRDANGNFIEGDEQSEAGTDSSVAPAAV
ALGTAVVVSESVTAIATQEEVREVHQQESAPTADTSAAEAAQETAAAQPADEAPAQPEIL
TPSVSQLQDERAPHQEVEIAVPAAEQTAPVAATAAIPAAPVEAEAAEPAVGRASNDPRER
RRRERLEREAEAARAKQAEQAAQAPALGAIAETEETFATAAVGTVEPQPVVVESEPAPVA
EATPAVEAESAPIVVEQPAELAQSVVQEEAAPAAPASTELATDETHKPDAVKEDELAQSE
FDRKREESRENHPR
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcaatgcgacccagcccgaggaattgcgggttgccttggtcgacggtcaacgc
ctgttcgacctggacatcgagtccggcgcccgcgaacagaagaaggccaacatctataaa
ggccgcatcacccgcatcgaacccagcctggaagccgccttcgtcgacttcggcgccgac
cgccacggcttcctcccgttgaaggaaatttcccgggagtacttcaagaagaacccggaa
ggccgcgtcaacatcaaggaagtgctctccgaaggccaggaagtagtcgtccaggtcgaa
aaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctcgccggccgc
tacctggtgctgatgcccaacaatccccgtgccggcggcatctctcgccgcatcgagggc
gaagagcgcaacgaactgcgtgaagccctgaacggcctcgacgcgcccggcgacatgggc
ctgatcgtccgcaccgccggcctgggccgcagcaccgaagaactgcagtgggacctcgac
tacctgctgcaactctggtccgccatcaccgaagcctccggcgagcgcaagggccccttc
ctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaggtcttgatcgacagcgtcgaagcccaggaagaagccctgagcttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtaccaggacagtgtcccgctgttc
aatcgcttccagatcgagagccagatcgagaccgccttccagcgcgaagtgaagctgccg
tcgggcggttccatcgtcatcgatcccaccgaagccctggtttccatcgacatcaactcg
gcgcgcgccaccaagggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaggaaattgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggtgaagaaccagcgcgccgtggaagaccgcgtccgcgaggcc
ctggaagccgaccgcgcccgcgtgcagatcggccgcatctcccgcttcggcctgctggaa
atgtcccgccagcgcctgcgcccttccctgcgcgaaaccagcggcatcgtctgcccgcgc
tgcaacggccaaggcatcatccgcgacgtggaatccctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaggatcgtaccgccgaggtgcgcgcccatgtaccgatccag
gtcgcttcgttcctgctcaacgaaaagcgcaacagcatcaccaagatcgagctacgcacc
cgcgtccgcatcatcatcctgccggacgaccacatcgagaccccgcacttcgaagtgcag
cgcctgcgcgatgacaatcccgagctgctgaacagccagtccagctacgagatggccaac
accgaagccgaagaggtgctgccggtcagctccacccgcaccctggtacgccaggaagcg
gcagtgaaggtagcgcccgagcgtgcaccggctcccgtgtccaccaccgccgaagtcgtg
accccggcagcgcccgtggccgccaaacccgcagcggaacccaacctgttcaagggcctg
gtcaagtccctggtcagcctgttcgccggcaagaccgaagagcagcccctggccgacaag
accgcgaccacgccggcaaccaccaagagcagcgacgagcaacgccgtcaggacgagcgc
cgcaacggtcgccagcagaatcgccgccgcgaaggccgtcgcgatgacgagcgcaagccg
cgcgaagagcgtcagccccgtgcagaacgcggtgagcgcagcgaacgtccgacgcgtgaa
gagcgcaagccgcgtgaagagcgccaacctcgcgaagatcgtcaaccgcgtgaagagcgc
gcctcccgcgaagagcgtcaacctcgcgaggagcgccagccccgtgaagagcgcgccaat
cgcgaagagcgccagccgcgtgaagagcgtcaaccccgcgaagagcgcgccagccgtgaa
gagcgccagccgcgcgaagagcgtcaaccccgtgaagagcgcgccgttcgcgaagagcgt
cagccccgtgaagagcgtcaacccagcgaagaacgcctgagcgccgaagagcgtccggct
cgcgaggagcgtcagccgcgtgaggagcgcaagccccgcgaagagcgtcagccgcgtgaa
gagcgcaaggcccgtgaagagcgtcaggcagcggccagcgccgaagagctgaacgaagaa
gaagtactggaaggtaacgacgagctggaagaaggcgaagagcgtccgcgtcgccgttcc
cgcggtcaacgccgtcgcagcaaccgccgtgagcgtcagcgtgacgccaatggcaacttc
atcgaaggcgacgagcagagcgaagcgggcaccgattcctctgttgcgccagcagccgtt
gccctgggcaccgccgtggtggtcagcgagagcgtaacggccatcgccacccaggaagag
gtacgggaagttcaccagcaagagtcggctcccaccgccgacacctcagccgccgaagcc
gctcaggaaactgcagcagcgcagcccgctgacgaagctcctgcccaaccggaaatcctc
acgcccagcgtgagccagctgcaggacgagcgcgcgccgcaccaggaagtcgagatcgcg
gttccggccgccgagcagaccgctcctgttgcagcgactgccgccatccctgcagctccg
gtcgaagcggaagcagcagagccggccgtaggtcgtgcctccaacgacccgcgcgagcgt
cgtcgtcgtgagcgcctggaacgtgaagccgaagccgcccgcgccaagcaggccgagcag
gcagctcaagcacctgccctgggcgctatcgccgaaaccgaggaaaccttcgcgaccgca
gcagtaggcaccgtcgagccgcagccggtagtagtcgagtccgagcccgccccggtagca
gaggcaacgcctgcggtcgaagcggaatcggcacccatcgtggtcgagcaacctgccgag
ctcgcacagagcgttgtgcaggaagaagcagcccctgccgctcctgccagcacggagctc
gcaaccgacgagacccacaagcccgacgcagtgaaagaggacgagctcgctcagtccgag
ttcgaccgcaagcgtgaagagtcacgggaaaaccatccccgctga
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