Pseudomonas oryzihabitans PRS08-11306: BJP27_09065
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Entry
BJP27_09065 CDS
T05074
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJP27_09065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_09065
Enzymes [BR:
ppsl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BJP27_09065
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BJP27_09065
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BJP27_09065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
APQ11646
LinkDB
All DBs
Position
complement(2009209..2010021)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIEPHVVGQRVRRVIVRDARLRWPVPEDLDVRLSGQRIEAVERRAKYL
LIRAESGTLIGHLGMSGSLRLVPADQPPAKHEHVDIELESGLSLRYTDPRRFGALLWTQD
PHAHVLLSKLGPEPLTDAFDGGRLFELSRGRSMAVKPFIMDNAVVVGVGNIYAAEALFAA
GIDPRRAAGSISRARYDRLAEEIKKVLARSIESGGTTLRDFIGGDGAPGYFKQELFVYGR
KGEFCKLCGTGLKEIRLGQRASVYCGKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacctgaagtcgaaaccacccgccggggcatcgagccccatgtcgtcggt
cagcgtgtgcgtcgggttatcgtccgtgacgcccgcctgcgctggccggtgcccgaggat
ctggatgtgcgcctctccggccagcgcatcgaggccgtggagcggcgcgccaagtatctg
ctgatccgcgccgagagcggcaccctgatcggccacctgggcatgtccggcagtctgagg
ttggtcccggcggaccagccgccggccaagcacgagcatgtcgacatcgagctggaatcc
ggtctgtcgctgcgctacaccgatccccggcgtttcggcgccttgctctggacccaggac
ccccatgcccacgtgctgctcagcaagctgggtcccgagcccctgaccgacgccttcgac
ggcggtcgactgttcgagctgtcacgcggccgcagcatggcggtcaagcccttcatcatg
gacaacgccgtggtggtgggcgtgggcaacatctacgccgccgaggcgctgttcgccgcc
ggtatcgatccccgccgcgccgccggcagcatctcccgggcgcgttacgatcgcctggcc
gaagagatcaagaaggtgctggcgcgctccatcgaaagcggcggtaccaccctgcgcgac
ttcatcggcggcgacggggcaccgggttatttcaagcaggagttgttcgtctacggccgc
aagggcgaattctgcaagctctgcgggacgggactcaaggagatccgcctcggccagcgc
gccagcgtctattgcggaaaatgccagcgatga
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integrated database retrieval system
