Pseudomonas oryzihabitans PRS08-11306: BJP27_09495
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Entry
BJP27_09495 CDS
T05074
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BJP27_09495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_09495
Enzymes [BR:
ppsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BJP27_09495
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BJP27_09495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
APQ11727
LinkDB
All DBs
Position
complement(2116667..2120098)
Genome browser
AA seq
1143 aa
AA seq
DB search
MSEVLTPGFMVVHGNRLEELRSLAVGWMRRYPLAPLENEQVLVQSNGIAQWLKLALAEDP
RGDDEGGCGVAAALEVQLPAAFLWRTYRQVLGRDNVPPSSPLDRAPLTWRLMRLLPTLLM
QPDFAALRRFLDDDGDLRKRYQLAERLADLYDGYQVYRADWLNDWAEGRDLLASLRDSRR
PLPESCRWQAQLWRALLADVGDGGLARSRAGVHRRFLEVMQAATEAPAGLPRRVVIFGLS
AIPAQTLEALAALARFSQVLLCVHNPCRHHWSDIVADQDLLRQNYRRQQRKPGMPQTLDA
EALHQHGQPLLASWGKQGRDYIHLLDEFDEPDGYRRLFEDLNGGRIDLFADTEPQHLLGQ
LQDDILELRPLAETRARWPAVEPARDRSVRFHVAHSPQREVEILHDQLLARFSSDGSLRP
RDVIVMVPDIDAYAPHIRAVFGQLDRSDPRFIPFSLADQHQRGFQPLLIALEHLLQLPDS
RFALSEILDLLDVPALRARFGLREGDLPTLHLWLEGAGVRWGLDAAQRSRLDLPEGLTQN
TWRFGLRRMLLGYAVGGGAALGDIEPFDEVGGLDAALVGPLVDLLDALDAAQAALAQPAR
PAEWGARLQALLALFFSAQDEHDEYLLEQLENLRERWLELCEDVALDEELPLTVVREAWL
AGLDAGGLAQRFLAGAVNFCTLMPMRAIPFRVVCLLGMHDGAYPRIHPPLDFDLMAQDYR
PGDRSRREDDRYLLLEALLSARDQFYVSWVGRSIRDNSERPPSVLIAQLRDHLLAGWRLA
GHEEEPERLLAALTQEHPLQPFSARYFCGERGYFSFAAEWLGVHDRTTRDEDALLPPLVL
EEPLGLDDLARFLRGPVDLFFANRLKVHFEAPDAPAEDEEPFGLDALTRYQLGEGLLEAA
LAEPEAVDQALSAAAERLRGSGRLPLAGFGERAGRALREPLPAVVAQVEALTLRWPEPLE
EAVTLDLEHREVQLVANLERLRCGPEGLLALTAQANGLGNARTRKWHRLLRPWVQHLVAA
AGGLQLTTAVVATDLTLLLPPLDTELAQRQLHELLDAWALGQRRPLPVAPRTAFAWLANE
PDKALAFAEQAYQGEAATHPALRRQYPDFAALLADEEFDGWCQTLYAPVFTAGWQVVGGE
GQA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaggtgctcactcccggattcatggtggtacacggcaatcggctcgaagagctg
cgcagcctggcggtcggctggatgcgtcggtatcccctggcgccgctggaaaacgaacag
gtactggtgcagagcaatggcatcgcccagtggctgaagctggcgctggccgaggatccg
cgcggagacgacgagggtggctgcggagtggccgcggcccttgaggtgcagttgccggcg
gcctttctctggcgcacctatcgccaggtgctgggccgggacaacgtaccgccatcctcg
ccgctggaccgcgcgcccctgacctggcggctgatgcggctcttgccgaccctgctcatg
cagccggactttgccgcgctacggcgctttctcgacgacgatggtgatctgcgcaagcgc
tatcagctggccgagcgcctggccgatctctacgacggctaccaggtttatcgcgccgac
tggctcaacgattgggccgagggccgcgatttgctggccagtctgcgtgacagccggcgc
cctttgccggaaagttgccgctggcaggcgcagctgtggcgcgccctgctggccgatgtt
ggcgacggcggtctggcccggagtcgggccggggtgcatcggcgttttctggaggtgatg
caggcggcgaccgaagcgccggccggcctgccgcggcgggtggtgatcttcggcttgtcg
gcaattccggcacagaccctcgaagccttggccgccctggcgcgcttcagccaggtgctg
ctctgtgtgcacaatccctgtcgccatcactggtccgacatcgtcgccgaccaggatcta
ctgcggcagaactatcgccgccagcagcgcaagccgggcatgccccagaccctggacgcc
gaggcactgcaccagcacggccagccgctgctggcgagctggggcaagcagggccgcgac
tatatccatctgctggacgaattcgacgaacctgacggctatcgccggctatttgaagac
ctcaacggcggtcgcatcgatctctttgccgataccgaaccccagcatctactcggccag
ttgcaggacgatatcctcgaattgcgtcccctggccgagacgcgcgcgcgttggccggcg
gtcgagccggcgcgggacaggtccgtgcgcttccatgtggcccatagtccgcagcgcgag
gtggagatccttcacgaccagttgctggctcgcttcagcagcgatggcagcctcaggccg
cgcgatgtcatcgtcatggtgccggacatcgatgcctatgcgccgcacatccgcgcggtg
ttcggccagctcgaccgtagcgatccgcgcttcattcccttcagtctggccgaccagcac
cagcgcggcttccagccgctgttgatcgccctggagcatctgctgcagctgcccgacagc
cgctttgccctgagcgagatcctcgatctgctggatgtgccggcgctgcgcgcgcgcttt
ggcctgcgcgaaggcgatctgccaaccctgcacctctggctggaaggcgccggtgtacgc
tgggggctggatgccgcgcagcgcagtcgtctcgacctgcccgagggcctgacgcagaac
acctggcgcttcggcctgaggcgcatgttgctgggctatgcggtgggcggcggggcggcc
ctgggcgacatcgagcccttcgacgaggtgggcggcttggacgccgcgctggtcgggccg
ctggtggatctgctcgatgccctggacgcggcccaggcagcactggcgcaaccggcccgg
ccggcggagtggggcgcgcgcttgcaggcgctgctggcgctgttcttcagcgcccaggac
gaacacgacgaatacctgctggagcagctggaaaatctgcgcgagcgctggctggagcta
tgcgaggacgtggcgctggacgaagagctgccgctcaccgtggttcgcgaggcctggctg
gccgggctggacgccggtggcctggcccagcgctttctcgctggggcggtcaacttctgc
accctgatgcccatgcgcgccattcccttccgcgtggtctgcctgctgggcatgcacgat
ggcgcctatccgcgcatccatccgccgctggatttcgacctcatggctcaagactatcgc
cccggtgaccgttcgcggcgcgaagacgaccgctatctgctgctggaggccctgctctcg
gcgcgcgaccagttctatgtcagctgggtggggcgtagcatccgcgacaacagcgagcga
ccgccgtcggtgctgatcgcccagttgcgtgatcatctcctggccggttggcggctggct
ggccatgaagaggagccggagcgtctgctcgcggccctgacccaggagcatccgttgcaa
cccttcagcgctcgctatttctgcggcgaacgcggctatttcagctttgccgccgagtgg
ctgggtgtgcacgaccgtaccacgcgggatgaggacgccctgttgccgccgctggtgttg
gaagagccgctgggactcgacgacctggcgcgctttctacgcgggccggtggatctgttc
ttcgccaatcgactcaaggtgcacttcgaagcgcccgatgccccggcggaagacgaggaa
cccttcggtctggacgccctgacccgttaccaactgggcgaaggtctgctggaagcggcg
ctggccgagccagaggctgtcgaccaagcgctcagcgcggcggccgaacgtctgcgcggc
agtgggcgcctgccgttggcgggttttggcgagcgggccggacgggcgttgcgcgagcca
ctgcccgccgtggtggcccaggtcgaggccttgacgctgcgctggcccgaacctctggaa
gaggccgtgaccctggatctcgaacatcgcgaagtgcagttggtggccaaccttgaacgt
ttgcgctgcggccccgaagggctgctggccctgaccgcccaggccaatggcctgggcaat
gcccgcacccgtaagtggcatcggctgttgcgaccctgggtgcagcacctggtcgcggcg
gccggtggtctgcagctcaccaccgccgtggtggcgaccgacctgaccctgctgctacca
ccgctggacaccgagctggcccagcggcagttgcatgaattgctggatgcctgggcgcta
ggtcagcggcgcccgctgccggtggcgccgcgcaccgccttcgcctggctggccaatgag
ccggacaaggccctggccttcgccgagcaggcctaccagggcgaagcggcgacccatccg
gcactgcgccgccaatatccggacttcgctgccttgctggccgacgaggaattcgacggc
tggtgccagaccctctatgcgccggtcttcaccgccggctggcaggtcgtgggcggggag
ggacaggcatga
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