Pseudomonas oryzihabitans PRS08-11306: BJP27_11910
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Entry
BJP27_11910 CDS
T05074
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJP27_11910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsl03021
]
BJP27_11910
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_11910
Enzymes [BR:
ppsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJP27_11910
Transcription machinery [BR:
ppsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJP27_11910
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJP27_11910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
APQ12170
LinkDB
All DBs
Position
complement(2658871..2659872)
Genome browser
AA seq
333 aa
AA seq
DB search
MQSSVNEFLTPRHIDVQAVSQTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLSLSKKGQGPVLASDIQVDHD
VEIVNGDHVIAHLADNGSLNMKLKIARGRGYEPADARQSEEDETRAIGRLQLDASFSPVR
RVAYVVENARVEQRTNLDKLVLDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagagttcggtaaatgagttcctgaccccccgccatatcgatgtgcaggcggttagt
cagacccgtgccaagatcaccctcgagcctctcgagcgtggtttcggccataccttgggc
aacgcgctgcggcgtatcctgttgtcctccatgcctggctgcgcggtagtcgaagcagag
atcgacggtgttctgcacgaatacagcgccatcgaaggcgtgcaggaagacgtgatcgag
atcctgctcaacctcaagggtctggccatcaagttgcacggccgtgacgaagtcaccctg
agcctgagcaagaaaggtcaggggccggttctggcctccgacattcaggtcgatcacgat
gtcgagatcgtcaacggcgatcacgtcatcgctcacctggcggacaacggttcgctgaac
atgaagctgaaaatcgcgcgcggtcgtggctatgagcccgccgatgcacgtcagagcgaa
gaagacgaaacccgtgccatcggtcgtctgcagctcgacgcttcgttcagcccggtgcgt
cgcgtggcgtacgtggtggaaaacgctcgggtcgagcagcgtaccaacctggacaagctc
gtgcttgacctggaaaccaacggtactctggatccggaagaagccatccgtcgtgctgcc
accatcctgcaacagcagctggctgcgttcgtcgacctcaagggcgacagcgagccggtc
gtggttgaacaggaagacgagatcgatccgatcctgttgcgtccggtagacgatctggaa
ctgaccgttcgttcggctaactgcctcaaggcggagaacatctactacatcggtgacctg
attcagcgtaccgaagtggagctgctcaagaccccgaacctgggtaagaagtccctgacc
gaaatcaaggacgtcttggcctcccgtggtctgtcgctcggtatgcgcctggacaactgg
ccccctgcaagccttaagaaggacgacaaggctactgcctga
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