Pseudomonas oryzihabitans PRS08-11306: BJP27_12065
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Entry
BJP27_12065 CDS
T05074
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJP27_12065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsl03021
]
BJP27_12065
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_12065
Enzymes [BR:
ppsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJP27_12065
Transcription machinery [BR:
ppsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJP27_12065
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJP27_12065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
gerPA
DUF3150
Motif
Other DBs
NCBI-ProteinID:
APQ12201
LinkDB
All DBs
Position
complement(2676721..2680920)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQLEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKYQLLNDEQYFEALEEFGDDFDARM
GAEAVFQLLGAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETIRHKDGSLTKNTRIVDTTVGRALLFQVVPAGLPYDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTLSGVSIGVNDFVIPDEKARIIDAATAE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMTNLSKEKVIDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTERGLIMTPHIEGGDVVEPLGERVL
GRVIARDVPKPGTEEIIVPAGTLVDERWVEFLELNSVDEVVVRSPITCETRHGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERADGALVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMDGTVAFVGMEEGITIKRQTDELTGLTNIEVLDAKDRPTSGKDIRPAVKL
IDANGKDLLLPGTDVPAQYFLPPNALVNLSDGAKVHVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPTDGTDPYEELIPKWRHLNVFE
GEQVSRGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSDTGDSSFIKGDQVELTHVLEENEQLVANDRFVAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRELGKPQR
VSASEAEAALTEALNSSAS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcaatctgttgaaaaaccagggtcaactcgaagagttcgatgccatc
cgtatcggtctggcctcgcccgagatgattcgttcctggtcgttcggtgaagtgaagaag
ccggagaccatcaactaccgtaccttcaagccggagcgcgatggtctgttctgtgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgcggcgtggaagtcgccctggccaaggtgcgtcgcgag
cgcatgggccacatcgagctggcttcgcccgtcgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcttgctgctggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctcgagaagtaccaactgctc
aacgacgagcagtacttcgaggcactggaagaattcggtgacgacttcgatgcccgcatg
ggtgcggaagccgtattccagctgctcggcgccattgatctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaacaagccggagtggatggtcatgacc
gtgctgcccgtgctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacttccgacctgaacgacctctatcgtcgcgtcatcaaccggaacaaccgcctcaag
cggctgctcgacctcgccgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagccgttgacgccctgctggacaacggccgtcgtggtcgtgctatcaccggttccaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaagatggccctggagctgttcaagcccttc
atcttcggcaagctggaagcccgcggcatggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgaactgcccgaggtctgggacgttctcgccgaagtcatccgcgaacacccc
gtgctgctcaaccgcgccccgaccctgcaccgtctgggtatccaggcgttcgagccggtc
ctcatcgaaggcaaggccatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctggaagcg
cgcgccctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtcctgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggccgcgtgttcgccgacctgcaggaagtcgatcgcgtcttccgtgccggc
gaggccgccctgcatgccaaggtcaaggtgcgcatcaacgagaccatccgtcacaaggac
ggcagcctgaccaagaacacccgcatcgtcgacaccaccgtcggccgcgcgctgctgttc
caggtcgtgcccgccggtctgccgtacgacgtggtcaaccagtcgatgaagaagaaggcc
atctccaagctgatcaaccactgctaccgcgtggtgggtctgaaggacaccgtcatcttc
gccgaccagctgatgtacaccggtttcgcctattcgaccctgtccggcgtctccattggc
gtcaacgacttcgtcatcccggacgagaaggcgcgcatcatcgatgccgccaccgccgag
gtgaaggaaatcgagagccagtacgcctccggcctggtgacccagggcgagaagtacaac
aaggtcatcgacctctggtcgaaggccaacgacgaagtgtccaaggcgatgatgaccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgaccaggagtccttcaac
tccatgtacatgatggccgattccggcgcccggggttccgcggcccagattcgtcagctc
gccggcatgcgtggcctgatggccaagccggacggctcaatcatcgagacgcccatcacc
gccaacttccgtgaaggcctgaacgtactccagtacttcatctccacccacggtgcccgt
aagggtctggcggataccgccctgaagaccgcgaactccggttacctgacccgtcgtctc
gtcgacgtggcccaggacctggtggtgaccgaagtcgattgcggcaccgaacgcggcctg
atcatgaccccgcacatcgaaggcggcgacgtggtcgagcccctgggtgagcgcgtgctg
ggtcgagtcatcgcccgtgacgtgcccaagccgggtaccgaagagatcatcgtgccggcc
ggcaccctggtcgacgagcgctgggtcgagttcctcgagctcaacagcgtcgacgaagtc
gtggtgcgttcgccgatcacctgcgaaacccgtcatggcatctgcgccaagtgctacggt
cgcgatctggcccgtggtcaccaggtcaacatcggtgaagcggtcggcgtcatcgccgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccggacctccgcggccgacagcgtccaggtcaagaatggcggtgccatccgcctg
cacaacctgaagcacgtcgaacgtgccgatggcgccctggttgccgtgtcccgttccggt
gagctggccatcgccgacgacttcggtcgtgagcgcgagcgctacaagctgccctacggt
gcggtgatttcggtcaaggaaggcgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccaccccatcgtcaccgagatggacggtaccgtggccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacatcgag
gtgctcgacgccaaggatcgcccgacttccggcaaggacatccgtccggctgtgaagctg
atcgacgccaacggcaaggacctgctgctgccgggtaccgacgtaccggcccagtacttc
ctgccgccgaacgcgctggtcaacctgagcgacggtgccaaggtgcatgtgggtgacgtt
atcgcccgtatcccccaggaaacctccaagacccgcgacatcaccggtggtctgccccgc
gtggccgacctcttcgaagcgcgtcgtcccaaggaaccggccatcctggcggagatcagc
ggtaccatctccttcggcaaggaaaccaagggcaagcgtcgcctggtcatcaccccgacc
gacggcaccgatccctacgaggagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtcagccgcggcgaagtcatctcggacggtccgagcaacccgcacgacatc
ctgcgtctgctgggtgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcggcagatg
ctgcgcaaggtcgaggtgagcgataccggtgattcgagcttcatcaagggcgatcaggtc
gaactgacccacgtcctggaagagaacgagcagctggtcgccaacgatcgcttcgtcgcc
aagtacgagcgtgtgctgctgggtatcaccaaggcctcgctgtccaccgagtccttcatc
tcggccgcttccttccaggagaccacccgtgtcctgaccgaagccgccgtgaccggcaag
cgcgacttcctgcgcggcctgaaggagaacgtggtagtgggtcgtctgatcccggccggt
accggtctggcctaccacagcgagcgcaagcgccagcgcgaactcggcaagccgcagcgc
gtcagcgccagcgaggccgaagccgccctgaccgaagcgctgaactccagcgccagctga
DBGET
integrated database retrieval system
