Pseudomonas oryzihabitans PRS08-11306: BJP27_12345
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Entry
BJP27_12345 CDS
T05074
Name
(GenBank) DNA methylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJP27_12345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppsl03000
]
BJP27_12345
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_12345
Enzymes [BR:
ppsl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
BJP27_12345
Transcription factors [BR:
ppsl03000
]
Prokaryotic type
Helix-turn-helix
AraC family
BJP27_12345
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BJP27_12345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
APQ12252
LinkDB
All DBs
Position
2742596..2744134
Genome browser
AA seq
512 aa
AA seq
DB search
MNTFPDIPAFERARLARDPRFDGLFYTAVLTTGIYCRPVCPAQPPRPENVSYYPSAAAAE
AAGYRPCLRCRPELSPAGGHWQRGDAILARALRLMDEGLDDGGLPVLAARLDLSERQLRR
LFVERLGAAPLAVLTTRRLLFAKQLLSETRLPITEVALAAGFGSLRRFNDAFRRAYGLAP
SQLRKGQAAASPVLVLRLAYRPPYDFAAQLDFLRGHALPGVEVVDDVSYARVIGTPERPG
WLRLSAWDAGSPALRLELHGAAPSELQAAVARIRRMFDLDADPQAIAQGLAVDPTLAELV
ARRPGLRLPSGWDGFEIAVRAVIGQQVSVVAATTMTARVVQRFGRPWGEPAQDASQPPAG
LHHFFPTVDALADAALEELTSLGLIRARAGTLGTVARALRAGEVDFDGGRTLDDFTRRWV
ALKGIGPWTAQYIALRALAHPDACPVEDLVLQKRLAPPGERLTAKALYARAEAWRPWRAY
GVMQVWREATWKAPADAPAEPVPTRLAKESPR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccttccccgacattcctgccttcgaacgcgcccgcctggcgcgtgatccgcgt
ttcgacggcctgttctacaccgcggtgctcaccaccggcatctattgccggccggtgtgc
ccggcgcaaccgccgcgtccggagaacgtcagctactaccccagcgccgcggccgccgaa
gccgccggctatcggccctgcctcaggtgccgcccggaactctcccccgccggcggccat
tggcagcgcggcgacgccatcctggcccgtgccctgcggctgatggacgaaggcctggac
gacggcggcctacccgtcctcgccgctcgcctcgatctcagcgaacgccagctgcgccgg
ctgttcgtcgaacgcctgggtgccgcgcccctggcagtactcaccacccgccgcctgttg
ttcgccaagcagctgctcagcgagacccggctgcccatcaccgaagtggccttggccgcc
ggcttcggcagtctgagacgcttcaacgatgccttccgccgcgcctacggcctggccccc
agccagttgcgcaagggccaggccgccgcttcgcccgtcttggtcctacgcctggcctat
cgaccaccctacgacttcgccgcccagctggatttcctccgtggccatgcgttgcccggc
gtcgaggtggtggacgacgtcagctacgcccgggtgataggcacgcccgaacgtcccggc
tggctgcgtctttccgcttgggacgccggcagcccggcgctgcgcctggaactccacggc
gccgcccctagcgaattgcaggcggcggtcgcgcgtatccgccgcatgttcgacttggac
gccgatccccaggccatcgcccagggcctcgccgtcgatccgaccctggccgaactggtg
gcccggcgccccggcctgcgcctgcccagcggttgggatggcttcgagatcgccgtgcgc
gccgtcatcggccaacaggtcagtgtggtggccgccactaccatgaccgcccgggtggtg
cagcgcttcggtcggccctggggcgaaccggcccaagacgccagccagccccctgctggc
ctgcatcacttcttccccacggtggacgccctcgccgatgccgccctggaagagctcacc
agcctcggcctgatccgcgcccgcgccggcaccctgggcaccgtggcccgggccttgcgc
gcgggcgaggtggacttcgacggcggtcgcaccctggacgacttcacccgccgctgggtt
gccttgaagggcatcggtccctggaccgcccagtacatcgccctgcgcgccctagcccat
cccgacgcctgcccggtggaagacctggtattgcagaagcgcctggcgccaccgggcgaa
cgcctcaccgccaaggccctctacgcccgcgccgaagcctggcggccctggcgcgcctac
ggggtgatgcaggtctggcgcgaggctacctggaaggcacctgccgacgcccccgccgag
cccgtccccacccgcctcgccaaggagtcaccgcgatga
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