Pseudomonas oryzihabitans PRS08-11306: BJP27_12365
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Entry
BJP27_12365 CDS
T05074
Name
(GenBank) type IV secretion protein Rhs
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
Tox-HNH-EHHH
TEN_YD-shell
OCRE
Motif
Other DBs
NCBI-ProteinID:
APQ12256
LinkDB
All DBs
Position
2747534..2752252
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AA seq
1572 aa
AA seq
DB search
MTTPRPPLGTLPITLAATQPDIRAVVQEFRTCLVDYRGFAEAWYGGVLDVEQKFTVGQEV
VTRAKDSKRQVSLYATCPVDGKLTLIHCFEAARFVPIGNTPVSIVPVNEGRGPRRSGAAP
AGAAQSAVIGADGTYTFAGCTPYQRYRVTFFPNVTGAQLETLYGSYQGVIDDLQAWLQQE
WTQKHQPSWATYRSASAGGKVGLQLEAAWSSLMRSIINLWNDIAQLFDVIAHPRKHLAKL
QGLLDPQVLEQLYNAGKDQLHTALLIASDEPLLWIFLCALIAWVKLLPPTTAAEVVGALT
GEVLLNVLIGVVLTGGLGLAVRLGGKLAQAAEGGRALGLLQELAEALMQRCARHAKPHSE
AAKPILAQGSAGLDASRKATVELKNGAAVEQIRADAAPYARGKRRKATRLSQEPRVDDVS
IPARTPSGKPAEPAALTCTDGCPVSMVTGEELLTLTDAELDGPLPFAWTRLYRSSACDSD
LGLGPGWSHALAHRLERQGGQLVWIDQENRRTPFPLPSQQRPAISNRLARAALYLGEQPD
ELILAQAGDSPRFYHFRRLELIAISDAYGNRLTVERDAQGRIQRLGNGLRALRLDYRQGR
IAAVDFQVRQPGDHHEASWHSLQTLVRYRYAANGQLLAASNALDETERYVYDDRHVILER
HLAGGAAFFWEWQGEGRDARCVRHWSSLGQLDSRYTWTDDGSVQITFSDGSQQHYTHDAN
ARLVRQVDPDGAETQKTYDAQGQLLSERDPLGAQVRYEYDAAGQLLARYPAQDEPTYYSY
CDGQLLSLTRGDATWRFEHNAQGDLTARTDPDGHTTRYRYTAQGRLAAIEHPDGSCHSFT
WNVAGQLIEEQLPDGGVRRYRYDALGRQTYRQQENGAITHYEWDALGRLRQLKLPGGASR
AFTYNAYGKVTAERDELGRITRYEYANGLHLVTRRLNPDGSTLSYRYDHARLLLTDIENE
RGEHYRLDYHPNGLIRSETGFDGRTCSYAYDLAGNLSEKTEHGSDGSTLTTRYARDREGR
LQRKVLPDGSQVDYAYDDLGRLIGVDDGQWPLAYRYDLQDRLIEEHQGWASFTYGYDACG
QLSHSRLPDGNRLHYYHGAGGVLAGIDLNGQPLTRHQHAPGGLELQRQQGALSSHYRHDD
QGRLLAHRLENRAERLLERRYHYDASGNLLGIDDSRKGQTRYLYDPLDRLVAVRGELPET
FAHDPAGTLLGGGEAGSIQGNRPLLHGDRHLDYDAHGNLVRERRGRAQALVTHYRYDSQH
RLIQATLPDGSEAHYRYDTFGRRIAKTVAGRTTEFLWQGDRLVAESGPNGYRSYLYEPGT
FRPLALLVGEGPQAVTPYHYHLDHLGTPQELTDASGTLAWSARYRAYGNLARLDIEQIAQ
PLRFQGQYHDPETGLHYNRHRYYHPETGSFITPDPIRLAGGLNSYRYAPNPTGWVDPLGL
ANVKGQCPGGENDKRPDKYYESRRAAFRQAKQDAAIPASENPTKIGRVKLTSAGETVYNS
GGPVLTREYHYNNIYGDRVVIQEHSHGHSEFPQDTASGKPHFNVREFNPETGNGHRTKTL
NLRAIAKHYVFE
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccccgcccacccctgggtaccctgcccatcacccttgcggccacccaaccg
gacattcgcgccgtcgtgcaggaattccgcacctgcctggtcgactaccgcggtttcgcc
gaggcctggtacggcggggtgctggacgtcgaacagaaattcaccgtgggccaggaagtg
gtcacccgcgccaaggacagcaagcgccaggtcagcctctacgccacctgcccagtcgac
ggcaagctgaccctcatccactgcttcgaagcggcgcgcttcgtgcccatcggcaacacc
ccggtgagcatcgtcccggtgaacgaaggacggggcccccggcgtagcggagcggctccg
gcgggcgccgcccagagcgccgtgatcggtgccgacggtacctacaccttcgccggctgc
actccctaccagcgctatcgggtcaccttcttccccaacgtcaccggcgcccagctggaa
accctctacggctcctaccagggtgtgatcgacgatctccaggcctggctgcagcaggag
tggacgcagaaacaccagccctcctgggcgacctatcgcagcgccagtgccggcggcaag
gtcggcctgcaactggaagccgcctggagcagcctgatgcgctccatcatcaatctatgg
aacgacattgcccagctgttcgatgtcatcgcccatccgcgcaagcatctggccaaactc
cagggcctgctcgatccccaggtcctcgaacagctctacaacgccggcaaggaccagttg
cataccgccctgctcatcgccagcgacgagcccttgctgtggatcttcctctgcgccctg
atcgcctgggtcaagctgctgccgcccactaccgcggcggaagtggtgggcgcccttacc
ggcgaggtgctgctcaacgtactgatcggcgtggtgctcaccggcggcctcggcctcgcc
gtccgcctcggtggcaagctggcgcaggccgccgaagggggccgcgccctgggcctgctt
caggaactcgccgaagccctgatgcaacgctgcgcccgccacgccaaaccccatagcgaa
gccgccaagccgatcctggcccagggtagcgccggcctcgacgcctcacgcaaggccacc
gtggaactcaagaacggcgccgcggtggaacagatccgcgccgatgcggcgccctacgcc
cgcggcaaaagacgcaaggccacccgcctcagccaggagccgcgggtcgacgacgtctcc
atcccggcgcgcacccccagcggcaaacccgccgagccggccgccctgacctgcaccgac
ggttgccccgtctccatggtgaccggcgaggaattgctcaccctcaccgacgccgagctg
gacggccccctgcccttcgcctggacccgcctctaccgcagcagtgcctgcgacagcgac
cttggcctgggccccggctggagccacgccctggcccaccgcctggagcgccagggtgga
caactggtctggatcgaccaggagaatcgtcggaccccctttcccctgcccagccagcag
cgtccggccatcagcaaccgcctggcccgcgccgccctctatctcggcgagcagccagac
gaactcatcctcgcccaggccggcgacagcccgcgcttctatcactttcgccgcctcgaa
ctgatcgccatcagcgacgcctacggcaatcgcctgaccgtcgagcgcgacgcccagggg
cgtatccagcgcctgggcaatggcctgcgcgccctgcgactggactatcggcagggtcgc
atcgccgccgtagacttccaggtgcgccagccaggcgatcaccacgaagcctcctggcac
agcctgcagaccctggtgcgctaccgctacgccgccaatggccagttgctggcggcgagc
aatgccctcgacgaaaccgagcgctacgtctacgacgatcgccatgtcatcctcgagcgc
cacctggcgggcggcgcggccttcttctgggaatggcagggcgagggccgcgatgcccgc
tgcgtgcgccactggtccagcctcggccaactggacagccgctacacctggacggacgac
ggctccgtacagatcaccttcagcgacggcagccagcagcactacacccacgacgccaac
gcccgcctggtgcgccaggtcgacccggatggcgcggaaacccagaaaacctacgacgcc
caaggccagttgctcagcgagcgcgatccccttggcgcccaggtgcgctacgaatacgac
gctgctggccagttgctcgcacgttaccccgcccaggacgaaccgacctattacagctac
tgcgatggccaactgctcagcctgacccgcggcgacgccacctggcgcttcgaacacaac
gcccagggcgacctcaccgcccgtaccgacccggacggccacaccacgcgctatcgctat
accgcccagggccgcctcgccgccatcgagcaccccgacggcagctgccacagcttcacc
tggaacgtcgccggccagctcatcgaagaacagttgcccgacggcggcgtgcggcgttat
cgctacgacgccctcggtcgtcagacctatcgccagcaggaaaacggcgccatcacccac
tacgagtgggatgccctcggccgcctgcgccagctcaagctgcccggcggcgccagccgc
gccttcacctacaacgcctatggcaaggtcaccgccgaacgcgacgaactggggcggata
acgcgctacgaatacgccaacggcctgcacctggtgacccgtcgactcaatccggacggc
agcaccctcagctatcgctacgaccacgctcgcctgttgctcaccgacatcgagaacgag
cgcggcgaacactaccggctggactaccaccccaacggcctgatccgcagcgaaaccggc
ttcgatggccgcacctgcagctacgcctacgacctcgccggcaacctcagcgaaaagacc
gagcacggcagcgacggcagcaccctgaccacccgttacgcgcgcgaccgcgaaggtcgc
ctgcagcgaaaggtcctgcccgatggcagccaggtggactacgcctacgacgacctcggc
cggctgatcggcgtcgacgacggccagtggccgctcgcctatcgctacgaccttcaggat
cgcctgatcgaagagcaccagggctgggcctccttcacctacggctacgacgcctgcggc
cagctcagccacagccgcctgcccgatggcaaccgactgcactactaccacggcgccggt
ggcgtgctggccggcatcgacctcaacggccagccgctgacccgtcatcagcacgctccc
ggcggcctggagctccaacgccagcaaggtgccctgtccagccactatcgccacgacgac
cagggccgtctgctcgcccatcgcctggaaaaccgcgccgagcgcctgctcgaacgccgc
taccactacgatgccagcggcaacctgctgggcatcgacgactcccgcaaaggccagacc
cgctacctctacgatcccttggatcgcctggtcgccgtgcgcggcgaactgcccgagacc
ttcgcccacgacccggccggcaccctgctgggcggtggcgaggccggcagcatccagggt
aaccgcccgctgctgcacggggatcgccacctggactacgacgcccacggcaacctcgtc
cgcgaacgccgcggccgagctcaggcgctggtcacccactaccgctacgacagccagcac
cgcctcatccaggccaccctgcccgatggcagcgaagctcactaccgctacgacaccttc
ggccgccgcatcgccaagaccgtcgccggacgcactaccgaattcctctggcaaggcgac
cgcctggtcgccgaaagcggtccgaacggctaccgcagctacctctacgaacccggcacc
ttccgtcccctggccctgctggtcggcgagggcccccaggcggtaacgccctaccactac
cacctcgaccacctcggcaccccccaggaactcaccgacgccagcggcaccctcgcctgg
tccgcccgctatcgcgcctacggcaacctggcccgcctggacatcgagcagatcgcccaa
cccctgcgcttccagggccaataccacgaccccgaaaccggcctccactacaaccgccac
cgctactatcatccggagacggggagcttcatcacccccgaccctattcggttggcgggt
gggttgaacagctaccggtatgcgcccaaccccaccggctgggtggatccgctggggttg
gcgaatgttaaggggcagtgtccgggtggtgaaaatgacaaaaggcccgataagtactat
gagtctcgcagagcggcgttccgacaagcaaagcaggatgcagctattcccgcatccgaa
aatccaacaaagattggcagagtcaaattaactagcgccggagaaaccgtctataacagt
ggcggcccagtcctaacaagagaatatcattacaataacatttatggcgacagagtagta
attcaagagcactcccatgggcattcggaatttcctcaagacaccgcaagtggaaagcct
cactttaacgtcagagaattcaacccagaaacaggaaacggtcacaggactaaaacctta
aacctgagagcgatagcaaaacactatgttttcgaataa
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