Pseudomonas oryzihabitans PRS08-11306: BJP27_13625
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Entry
BJP27_13625 CDS
T05074
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03030
DNA replication
ppsl03410
Base excision repair
ppsl03420
Nucleotide excision repair
ppsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJP27_13625
03410 Base excision repair
BJP27_13625
03420 Nucleotide excision repair
BJP27_13625
03440 Homologous recombination
BJP27_13625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsl03032
]
BJP27_13625
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_13625
Enzymes [BR:
ppsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BJP27_13625
DNA replication proteins [BR:
ppsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BJP27_13625
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BJP27_13625
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJP27_13625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
APQ12488
LinkDB
All DBs
Position
3021457..3024204
Genome browser
AA seq
915 aa
AA seq
DB search
MSHAPLVLVDGSSYLYRAFHALPPLMTSTGKPTGAVKGVLNMLLSLRRQYPDSLFAVVFD
AKGPTFRDELFADYKAQRPAMPDDLRSQVEPLHACIRALGLPLLAVEGVEADDVIGTLAR
HCASAERPVVISTGDKDMAQLVCPYVTLVNTMSGSVLDVEGVKTKFGVGPELIIDYLALM
GDKIDNIPGVPGVGEKTAAGLLNGIGGGLDTLYANLEAVAALPLRGAKSLAAKLDQHREQ
AYLSYQLATIKLDVPLELTFDELKVGEPHVEALMALYQELEFKSWLDELIRDTKRQGAPL
PLAEDAAATQVETHYDTVLEQADFDAWLARLQAADCFAFDTETTSIDAQRADLVGLSFAV
APGQAAYVPLAHSYMGAPTQLDLQGVLDALKPLLEDPKKLKVMQHGKYDLNVLDRYDIKI
QGIAFDTMLESYVLDATATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLTFDQIAIEQAG
PYAAEDADVTLRLHQTLWPKLETVPGLASVLRDIEMPLVPALARIERNGALVDSALLGVQ
SRELGEKMIALEKEAYELAGQEFNLGSPKQLGEILFVKLGLPVISKTASGQPSTAEAVLQ
ELADQDFPLPKVLMQYRQMSKLKSTYTDKLPQQINPRTKRIHTSYHQAVTATGRLSSSDP
NLQNIPIRTAEGRRIRQAFVAPQGYRLLAADYSQIELRIMAHLAQDEGLLHAFQNDLDVH
RATAAEVMGVPLEEVSHEDRRRAKAINFGLIYGMSAFGLAKQIGVGRAEAQAYIDRYFQR
YPGVLAYMERTRAQVVDQGYVETLYGRRLYLPDIHSKNQGLRRAAERAAINAPMQGTAAD
IIKRAMIAVDGWLQSTPDLDARVILQVHDELVLEVREDQVERLREGLLPLMSGAGELDVP
LLVESGVGGNWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgcccccctcgtcctggtggacggttcctcctatctctatcgcgccttccat
gccctgccgccgttgatgacctccactggcaagccgaccggcgcggtgaagggcgtgctc
aacatgctgctctccctgcggcgccagtatccggacagcctcttcgccgtggtcttcgac
gccaagggcccgactttccgcgacgaactcttcgccgactacaaggcccagcgcccggcc
atgcccgacgacctgcgcagccaggtcgagccgctgcacgcctgcatccgcgccctgggt
ctgccgctgctggcggtcgaaggggtggaagccgatgacgtcatcggtaccctcgcccgc
cactgcgccagcgccgagcgcccggtggtgatctccaccggtgacaaggacatggcccaa
ctggtatgcccctacgtcaccctggtcaacaccatgagcggcagcgtgctggacgtcgaa
ggggtgaagaccaagttcggcgtgggcccggagttgatcatcgactacctggcgctgatg
ggcgacaagatcgacaacatccccggggtgcccggagtgggcgagaagaccgctgccggc
ctgctcaacggcatcggcggtggcctggataccctctatgccaatctggaggccgtggcc
gccctgcccctgcgcggcgccaagtccctggccgccaagctggaccagcatcgcgaacag
gcctacctgtcctaccagctcgccaccatcaagctggacgtgccgctggagctgaccttc
gatgagctcaaagtcggcgaaccccatgtggaagccctgatggcgctctaccaggagctg
gaattcaagtcttggctagacgagctgatccgcgacaccaagcgccagggcgcccccctg
ccgctggccgaggacgccgccgccacccaggtggagacccactacgacaccgtgctggaa
caggccgacttcgacgcctggctggcacggctgcaagcggccgactgcttcgccttcgat
accgagaccaccagcatcgatgcccagcgcgccgacctggtagggctgtccttcgccgtg
gcaccgggccaggccgcctatgtgcccctggcgcacagctacatgggcgcgccgacccag
ctcgatctgcaaggggtgctggacgcgctcaagccgctgctggaagaccccaagaagctc
aaggtgatgcagcacggcaagtacgacctcaatgtgctggatcgctacgacatcaagatc
cagggcatcgccttcgacaccatgctcgaatcctatgtgctggacgccaccgccacccgc
cacgatatggacagcctggcactcaagtacctgggccacagcaccatccgcttcgaggac
atcgccggcaagggtgccaaacagctgaccttcgaccagatcgccatcgagcaggccggc
ccctatgccgccgaggatgccgacgtcaccctgcgcctgcaccagactctctggcccaag
ctggaaacggtgcctggcctggcgtcggtgctgcgcgacatcgagatgccattggtgccg
gcgttggcgcgcatcgagcgcaacggcgctctggtcgattcggcgctgctcggggtgcag
agccgcgagctgggcgagaagatgatcgccctggaaaaggaggcctacgaactggccggc
caggaattcaacctgggctcgcccaagcagctgggcgagatcctcttcgtcaagctgggc
ctgccggtgatcagcaagaccgcttccgggcagccctccaccgccgaggcggtactgcag
gagctggccgaccaggacttcccgctgcccaaggtgctgatgcagtaccggcagatgagc
aagctcaagagcacctacaccgacaagctgccgcagcagatcaacccgcgcaccaagcgc
atccacaccagctaccaccaggcagtgacggcgaccggccgtctgtcctccagtgacccg
aacctgcagaacatcccgatccgcaccgccgagggccggcgtatccgccaggccttcgtc
gcgccccagggctatcgcctgctggcagcggactattcgcagatcgaattgcgcatcatg
gcccacctggcccaggacgagggcctgctgcacgccttccagaacgatctggacgtgcac
cgcgccaccgccgccgaggtgatgggcgtgcccctggaagaggtcagccacgaagatcgc
cgccgcgccaaggccatcaacttcggcctgatctacggcatgagcgccttcggcctggcc
aagcagatcggcgtcggccgcgccgaggcccaggcctacatcgaccgttacttccagcgt
tatccgggcgtgctggcctacatggagcgcacccgcgcccaggtggtggaccagggctat
gtggagaccctctacggtcgccggctgtacctgccggacatccactccaagaaccagggt
ctacgccgcgccgccgaacgggcagcgatcaacgcccccatgcagggcaccgcggcggac
atcatcaaacgcgccatgatcgccgtggacggctggctgcagtcgaccccggatctggac
gcccgggtgatcctgcaggtacacgacgaactggtgctggaggtgcgcgaagaccaggtg
gaacggctgcgcgaagggctactgccgctgatgagcggtgccggcgagctggacgtgccg
ctgctggtggagtcgggcgtgggtggcaactgggatgaggcgcactga
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