Pseudomonas oryzihabitans PRS08-11306: BJP27_14385
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Entry
BJP27_14385 CDS
T05074
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03420
Nucleotide excision repair
ppsl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJP27_14385
03430 Mismatch repair
BJP27_14385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_14385
Enzymes [BR:
ppsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJP27_14385
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJP27_14385
MMR (mismatch excision repair)
Other MMR factors
BJP27_14385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_22
AAA_11
DUF4391
Motif
Other DBs
NCBI-ProteinID:
APQ12634
LinkDB
All DBs
Position
complement(3182331..3184499)
Genome browser
AA seq
722 aa
AA seq
DB search
MNDDISLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVERASPHSIL
SVTFTNKAAAEMRHRIEQLLGMSPQGMWVGTFHGLAHRLLRAHWQEAGLAQNFQILDSDD
QQRIVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQAAGDLFLSTMRSIYEAYE
AACARAGVIDFSELLLRALDLWRNNPDLLAHYQRRFQHLLVDEFQDTNAVQYAWLKHLAQ
NGASLMVVGDDDQSIYGWRGAKIENIQQFNEDFSAEIIRLEQNYRSTDTILKAANGLIAH
NFGRLGKELWTDTGEGDAITLYAGFNEHDEARYIVETIESEFKKGIRRSEMAILYRSNAQ
SRVLEEALLREKIPYRIYGGLRFFERAEIKNAMAYLRLIQHRHDDAALERVINVPPRGIG
EKTVEALRSAARAQNTSLWQALHDLVGARAVSGRAASALNAFVELVDTLALKAEDLSLHN
LVQQIIEQTGLVTFHKEEKGEKGQARVENLEELVSAARSFDFSGDEEMTPLAAFLDHAAL
ESGDTQADSHEDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHKMSLEEPGRLEEERRLAY
VGITRAMRRLVMSYAETRRLYGSETYNKVSRFVREVPDGLIQEVRLSNAVKQPFAGNRPN
PFAQAPVPETTFSLGQPVRHALFGEGVILNYEGSGAHARVQVNFTSEGSKWLMVSYAKLE
PL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgacatctccctgctgctcaattccctcaacgatgcccagcgccaggccgtg
gccgcgcccctgggtcgtcaactggtcttggccggtgccggctcgggcaagacccgggtg
ctggtgcaccgcattgcctggctgatccaggtcgagcgcgcctcgccgcactccatcctc
tcggtgaccttcaccaacaaggccgctgccgagatgcgccaccgcatcgagcaattgctg
ggcatgagtccgcagggcatgtgggtcggcaccttccacggcctggcccatcgtctgctg
cgcgcccattggcaggaagcgggcctggcgcagaacttccagatcctcgacagcgacgac
cagcagcgcatcgtcaagcgggtgatccgcgagctgggcctcgacgagcagcgctggcca
gcacgccaggcacagtggttcatcaacggccagaaggatgagggcctgcggccgcagcat
atccaggcggccggcgacctgttcctcagcactatgcgcagcatctacgaagcctacgag
gcggcctgcgcccgtgccggagtgatcgacttctccgagctgctgctgcgcgccctggac
ctctggcgcaacaacccggatctgctggcgcactaccagcggcgcttccagcacctgctg
gtggacgaattccaggacaccaacgccgttcagtacgcctggctcaagcacctcgcccag
aatggcgccagcctcatggtggtgggcgacgacgaccagtccatctatggctggcgcggc
gccaagatcgagaacatccagcaattcaacgaggatttctcggcggagatcatccgtctg
gagcagaactaccgctccaccgacaccatcctcaaggctgccaacggcctgatcgcccat
aacttcggccgcctcggcaaggagctgtggaccgacaccggcgaaggcgacgccatcacc
ctctatgccggcttcaacgagcacgacgaggcgcgctacatcgtcgagaccatcgagagc
gagttcaagaagggcatccggcgcagcgagatggccatcctctaccgctccaatgcccag
tcacgggtgctggaagaggcgctgctgcgagagaagattccctatcgcatctacggcggc
ctgagattcttcgagcgcgccgagatcaagaacgccatggcctatctgcggttgatccag
catcgccatgacgatgccgccctggaacgggtgatcaacgtaccgccgcgcggcatcggc
gagaagaccgtagaggcgctgcgcagcgccgcgcgtgcccagaacacctcgctgtggcag
gccctgcacgacctggtcggcgcccgcgccgtgtcgggtcgcgccgcctcggcgctcaat
gccttcgtcgaactggtcgacaccctggcccttaaggccgaggacctgtccctgcacaac
ctggtgcagcagatcatcgagcagaccggcctggtcaccttccacaaggaagaaaagggc
gagaaaggccaggcccgggtagagaacctggaagaactggtcagtgccgcgcgttctttc
gatttcagcggcgacgaggagatgacgcccctggcggccttcctcgaccatgcggccctg
gaatccggcgatacccaggccgacagccacgaagacagcgtccagttgatgaccctgcac
agcgccaagggcctggaattccccctggtgttcctcgccggcatggaagagggcctgttc
ccacacaagatgagcctggaagaacccggtcgtctcgaagaagagcgccgcctggcctat
gtgggcatcacccgcgccatgcgccggctggtgatgagctatgcggaaacccgcaggctt
tatggcagcgaaacctacaacaaggtctcgcgcttcgtccgcgaggtgccggatggcctg
atccaggaggtgcggctgtccaatgcggtcaagcagcccttcgccggcaatcgccccaac
cccttcgcccaggcaccggtcccggaaacgaccttcagcctcggccagccggtgcgccat
gccctgttcggtgaaggcgtcatcctcaattacgaaggttccggtgcccatgcgcgggtg
caggtgaacttcacctccgaaggcagcaagtggctgatggtgagctacgccaagctcgag
ccgctctag
DBGET
integrated database retrieval system
