KEGG   Pseudomonas oryzihabitans PRS08-11306: BJP27_17745
Entry
BJP27_17745       CDS       T05074                                 
Name
(GenBank) uracil-DNA glycosylase
  KO
K21929  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
ppsl  Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ppsl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BJP27_17745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppsl03400]
    BJP27_17745
Enzymes [BR:ppsl01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     BJP27_17745
DNA repair and recombination proteins [BR:ppsl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     BJP27_17745
SSDB
Motif
Pfam: DUF4130 UDG
Other DBs
NCBI-ProteinID: APQ13248
LinkDB
Position
complement(3938125..3939564)
AA seq 479 aa
MHKVSFDGTFAGWRQEARRLLQAGIAPAQVSWQESRGLGDLFDEPTEAVAPPPSGAVRIP
PQLAEALTYAACFRSDDRWALLYQVLWRVARGERAAMLAGDEDGSELQRRVKAIRREIHH
VHAFLRFRPRAESAGPPAWVAWHQPAHDVLALAAPHFCDRMGNSSWLIATPEAAALWDGQ
ALQLIEPCPTDLQQLARQTPEDDDRNAGDELWRAYYRSTFNPARANPRTLRGNMPARFWK
DLPEGPLIPALLSEARAGAQRLAQAEAVGRQSGREVLIAAERAQPERPLPTTLDECRRCD
LWEKATQPVAGEGQRTARILLLGEQPGDQEDLAGRPFVGPAGQVLMAALAEAGLDRGEVF
LTNAVKHFKWIPQGLRRKHVTPGPEIAPCRYWLEQELRDIQPTVVVALGSTALEALLRRK
PRGLAQFMGRPLRLDERWIIATYHPSYILRTPDARQQEQARQALVAALREAKALAADSD
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgcacaaggtcagtttcgacggcaccttcgccggctggcgccaggaggcgcgccggctg
ctccaggccggcatcgccccggcccaggtgagctggcaggagagtcgtggactgggcgat
ctcttcgatgagccgaccgaagccgtggcgccgccacccagcggcgccgtgcgcatcccg
ccgcaactggccgaagccttgacctacgccgcctgtttccgcagtgatgaccgctgggcc
ctgctctaccaggtgctctggcgggtcgcccggggcgagcgggcggcgatgctggccggc
gacgaggacggcagcgaattgcaacgccgggtcaaggcgatccgccgcgagatccatcat
gtacacgccttcctcagatttcgtccgcgcgcggaaagcgccggcccgccggcctgggtg
gcctggcaccagccggcccacgatgtattggctctggcggcgccgcacttctgcgaccgc
atgggtaacagcagctggctgatcgccactccggaggcggccgcactctgggatggtcag
gcgttgcaactgatcgaaccctgtcccaccgacctgcaacagctagcgcgccagacgccg
gaggacgacgaccgtaacgccggcgacgaactctggcgcgcctactatcgcagcaccttc
aatccggcccgggccaatccgcgcaccctgaggggcaacatgccggcacgcttctggaag
gatctgccggaaggcccgctgatcccagcgctgctcagcgaggcccgtgccggtgcccag
cgcctggctcaggccgaagccgtcggtcggcagagcggtcgcgaggtgctgatcgccgcc
gaacgcgcccaacccgaacgcccgctacccaccaccctggacgagtgccggcgctgcgac
ctctgggaaaaggccacccagccggtggccggcgaaggccagcgcaccgcgcgtatcctc
ttgctcggcgagcagcccggtgaccaggaagacctggccggccgccccttcgtcggtccg
gccggacaggtgttgatggcggcgctcgccgaggcgggactcgaccggggcgaggtattc
ctcaccaatgcggtcaagcacttcaaatggattccccaggggctcagacgcaagcacgtc
acccccggaccggagatcgcgccctgtcgctactggctggagcaggaattgcgcgatatc
cagccgaccgtggtggtcgcgctcggctcgacggcgctggaagctctgctccggcgcaag
ccaagaggcctcgcgcaattcatgggccggccgctgcgcctggacgagcgctggatcatc
gccacctatcacccctcctacatcttgcgtaccccggatgcccggcagcaggaacaggcc
cgccaggccctggtcgccgccttgcgcgaggccaaagccctggcggccgacagcgactag

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