Pseudomonas oryzihabitans PRS08-11306: BJP27_18395
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Entry
BJP27_18395 CDS
T05074
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsl03019
]
BJP27_18395
Enzymes [BR:
ppsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BJP27_18395
Messenger RNA biogenesis [BR:
ppsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BJP27_18395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_19
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APQ13374
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All DBs
Position
4086367..4088871
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AA seq
834 aa
AA seq
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MTPLPIDVVLPDLRFALAASDDCVLEAPPGAGKTTRVPLALLGEPWLAGQRILLLEPRRL
AARAAAERLAAELGESVGETVGYRIRLESRVGPRTRIEVVTEGILTRRLQDDPALEGVGL
VIFDEFHERSLDADLALALTLSGRELLRDTPLKVLVMSATLEGERLAALLGGAPVVRSEG
RMFPVTTRWGRPLGQDERLEARVATTVLQALDEETGSLLVFLPGQAEIRRTAERLAEQLP
AGVLLCPLHGELELAAQRAAIEPAPAGLRKVVLATNIAETSLTIEGVRVVVDAGLARVPA
FDPGSGMTRLTTRRISRASATQRQGRAGRLEPGVCYRLWSEELHQQLPAYDSAEILQADL
AGLALQLARWGMTAEELAWLDPPPAAALAQARDLLVRLGALDEQGSLTAHGQAMSGLPAH
PRLAHLLLCGQRWGLAERACEIAALLGERDLAPGQGADLHTRLLLLAGEGRGPRGGVARI
RQLVRQYRGLLRGKATEPVADPEHPRWTGALLACAYPDRIAQQRKAGGQDYRLANGRAAS
FGEPDALMKSPWLVVADLGSRQGQREERIYLAAELEPALFDGPLAEQVASHDELDWDERE
GVLRAERQRRVGQLVLSREPLKQLDAAARSRALLGLVRRKGLELLPWTPELRQWQARVGL
LRELDLQQGGASDWPDVSDAALLDSLEAWLLPYLDRVTRLAHFANLDLAAMLQGLLPWPL
PRQLDELAPRSLAVPSGSSIRLDYSEHPPVLAVRLQELFGLADTPRIAGGRLAVKLHLLS
PARRPVQVTQDLASFWANTYVEVKKDLKGRYPKHYWPDDPLIAEPTARAKPRGQ
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccttgcccatcgatgttgtcctgcccgatctgcgctttgccctggcggccagt
gatgactgcgtgctggaggcgccgcccggcgccggcaagaccacccgggtgcccctggcg
ctgctcggcgaaccctggctggccggccagcgcatcctgctgctcgaaccccggcggctg
gcggcccgcgccgccgccgagcgcctggccgcggagctgggcgaaagcgtcggcgagacc
gtgggctatcgcatccggctggaaagtagggtagggccccgaacccgcatcgaggtggtc
accgaaggcatcctgacccggcggttgcaggacgatccggcgctggagggcgtcggcctg
gtgatcttcgatgaattccacgagcgcagcctggatgccgacctggccctggcgctgacc
ctgagcggtcgcgaactgctgcgcgatacgccgctcaaggtgctggtgatgtccgccacc
ctggaaggcgaacgcctggcggccctgctgggtggcgcgccggtggtgcgcagcgagggg
cggatgtttccggtcaccacccgctggggccggccactcggccaggacgaacgcctggaa
gcgcgggtggccactaccgtcttgcaggcgttggacgaagagaccggcagcctgctggtg
ttcctgcccggccaggcggagatccgccgcaccgctgagcgcctggccgagcagctcccc
gccggggtgctgttgtgtccgctgcatggcgagttggagctggccgcccagcgcgctgcc
atcgagccggcgccggccggcctgcgcaaggtggtgctggccaccaacatcgccgagacc
agcctgaccatcgagggcgtccgggtggtggtggacgccggtctggcacgggtgccggcc
ttcgatcccggcagtggcatgacccggctgaccacccggcgcatctcccgcgcctcggcc
acccagcgccagggtcgcgccgggcggctggagccgggcgtctgctatcggctctggtcg
gaagagctgcaccagcagttgccggcctacgacagcgccgagatcctccaggccgatctg
gccgggctggcgctgcaactggcgcgctgggggatgaccgccgaggagctggcctggctc
gatccgccgcccgcagccgccctggcccaggcgcgggacctgctggtacgcctgggcgcc
ctggacgaacagggcagcctcaccgcccacggccaggccatgagcggcctgcctgctcat
ccgcgcctggcgcacctgctcctttgcggacagcgctggggcctagccgagcgggcctgc
gagatcgcggcattgctgggcgagcgcgacctggcgccggggcagggcgccgacctgcac
acccgtttgctgctcctggccggcgaaggtcgcggtccgcgtggcggtgtggcgcgcatc
cgccaactggtccgccagtaccgcggcctgttgagaggcaaggccacggagccggtagcc
gatcctgagcacccgcgctggaccggtgccctgctggcctgcgcctatccggatcgcatt
gcccagcagcgcaaggccggcggccaggactatcgcctggccaacggtcgggccgctagc
ttcggcgagccggatgcgctgatgaagtcgccctggctggtggtggccgacctgggcagt
cgccaggggcagcgcgaagagcgcatctatctggccgccgaactggagccggcactgttc
gacggtccgctggccgagcaggtcgccagtcacgacgaactggactgggatgaacgtgaa
ggcgtcctgcgcgccgaacgccagcggcgggtaggtcaactggtgctgagtcgcgagcca
ctgaagcaactggacgccgccgctcgcagccgggccctgctcggcctggtgcgccgcaag
gggctggagctgctgccctggacccccgaattgcgccagtggcaggcgcgggttggtttg
ctgcgcgaactggacctgcaacagggcggggcgagcgactggccggatgtcagcgacgcc
gccctgctcgatagcctggaagcctggctgctgccctacctggatcgcgtcacgcgcctg
gcccatttcgccaacctggacctggccgccatgctccagggcttgctgccctggccgctg
ccgcgccagctcgacgaactggcaccacgcagcctggcggtgccctcgggctccagcatt
cgcctggactacagcgaacatcccccggtgctggcggtgcggctacaggagctgttcggc
ctggccgataccccgcgcatcgccggtggccgcctggcggtcaagctgcacctgctctcg
ccggcgcggcgcccggtgcaggtcacccaggatctggccagtttctgggccaacacctac
gtggaggtgaagaaggatctcaaggggcgctatcccaagcactactggccggacgatccg
ctgatcgccgaaccgaccgcgcgggccaagccgcgcggtcagtga
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