Pseudomonas oryzihabitans PRS08-11306: BJP27_20940
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Entry
BJP27_20940 CDS
T05074
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppsl
Pseudomonas oryzihabitans PRS08-11306
Pathway
ppsl03030
DNA replication
ppsl03430
Mismatch repair
ppsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJP27_20940
03430 Mismatch repair
BJP27_20940
03440 Homologous recombination
BJP27_20940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsl03032
]
BJP27_20940
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_20940
Enzymes [BR:
ppsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BJP27_20940
DNA replication proteins [BR:
ppsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BJP27_20940
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BJP27_20940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
T2SSK
HROB
Motif
Other DBs
NCBI-ProteinID:
APQ13839
LinkDB
All DBs
Position
4655866..4659387
Genome browser
AA seq
1173 aa
AA seq
DB search
MSASFVHLRLHTEYSLVDGIVRVKGLVKAAEAAGMPAVAVTDQGNLCSLVKFYKAAMGAG
IKPIAGADIWLAGRDGDAPLSRMTLLVMNAKGYRNLTELLSRGFQEGQQEGQIIIQRDWV
KEASEGLIALSGSKEGEIGLALLEGDLALADQLFEEWQQVFQDRFYLEVQRTERAGDEEH
LHAAVALADRCGGALVATNDVRFLKAEDFEAHETRVCIGEGRPLDDPRRERKYSDQQYLK
SAAEMAELFSDLPEALENTVEIAKRCNIEIQLGKYFLPNFPIPNGMTINDYLRHVSFEGL
EERLAVLWPRETTPNYEEKRQEYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIEYV
ADMYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLQKAFEQE
EVLRDFLATDEDAKEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEDGNGLV
TQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINRTEVAEGREPLNIDFIPLDDKPTYA
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMGGYTLGQADMLRRAMGKKKPE
EMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVILIEECRHMKLRIDTPDVNISEFKFTVNDGGRIVYGLGAI
KGVGEGPVEAIVEARAEGPFKDLFDFCARVDLKRINKRTLEALIRSGALDRLGPHYHDEI
KAYQATIDQNRAVLLAAMEEAIASAEQTARSHDSGHVDLFGGVFAEPEADVYVNHRRARE
LNLKERLRGEKETLGLYLTGHPIEEYEGEVRRLARQRIVDLKPSRETQTVAGLIVNLRVM
KNKRGDKMGFVTLDDRSGRIEASLFAEAFNAAQALLQTDALVIVEGEVSQDDFSGGLRLR
AKRVLGLEEARTALAESLRIAVRSEALAGDRLRWLGELCGRHRGACPVTIDYQGPTARAL
LQFGENYRIDPADGLIQTLRDQFGRENVFLNYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcatccttcgttcatctgcgtctgcacacggagtactccctggtcgacgggatc
gtgcgggtgaaggggctggtcaaggccgccgaggcggccgggatgccagcggtagccgtg
accgaccagggcaacctctgctcgctggtcaagttctacaaggccgccatgggcgccggg
atcaagcccatcgccggggcggacatctggctcgccggccgcgacggcgatgccccgttg
agccgcatgaccctgctggtgatgaatgccaagggctatcgcaacctcaccgagctcttg
tcccgcggtttccaggaaggtcagcaggaaggccagatcatcatccagcgcgactgggtg
aaggaggcgagcgaggggctgatcgccttgtccggctccaaggaaggggagatcggtctg
gcgctgctcgagggcgatctggcgttggccgatcagctgttcgaggaatggcagcaggta
ttccaggatcgcttctatctggaagtccagcgcaccgagcgggccggcgacgaagaacac
ctgcacgccgccgtggccctggccgatcgctgtggtggtgccctggtagcgaccaacgac
gtgcgctttctcaaggccgaggacttcgaagcccacgagacccgcgtctgcatcggcgaa
ggccgcccgctggacgatccgcgccgcgagcgcaagtacagtgatcagcagtacctgaag
tcggcggccgaaatggccgagttgttcagcgacctgcccgaggcgctggaaaataccgtc
gagatcgccaagcgctgcaatatcgagatccagctgggcaaatacttcctgcccaacttc
ccgattcccaacgggatgaccatcaacgactacctgcgccatgtgtccttcgaaggtctg
gaggagcggctggccgtgctctggccgcgcgagaccacgccaaactacgaagagaagcgc
caggagtacgtcgaccgactcaatttcgagctcgacatcatcatccagatgggcttcccc
ggttacttcctcatcgtgatggacttcatcaagtgggcgaagaacaacggcgtaccggtg
ggccccggccggggctcgggtgccggctcgctggtggcctatgtcctgaagatcaccgac
ctcgatccgctggcctacgacctgctgttcgagcgcttcctcaatcccgagcggatttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtgatcgagtacgtg
gccgacatgtacggccgcgaggcggtgagccagatcatcaccttcggcaccatggctgcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctatggcctggccgatcgc
ctgtcgaagatgattcccttcgaagtgggcatgaccctgcagaaggccttcgagcaggaa
gaggtgctgcgcgatttcctggcgaccgacgaggacgccaaggaaatctgggacatggcc
ctgaagctcgaaggcatcacccggggtaccggcaagcacgccggcggcgtggtgatcgcg
ccgaccaagttgaccgacttctcgcccatcgcctgcgacgaagacggcaacggcctggtg
acccagttcgacaaggacgatgtcgaacaggccggcttggtcaagttcgacttcctcggg
ctgcggaccctgaccatcatcaagtgggcgttggagaccatcaaccgcacggaagtggca
gaggggcgcgagccgctcaacatcgacttcattccactggacgacaagccgacctacgcc
ctgctgcagaaggccgagaccactgccgtcttccagctggaatcccgcggcatgaaggag
ctgatcaagaagctcaagccggactgcctggaagacctcatcgccctggtggcgctgttc
cgtcccggtccgctgcagtcgggcatggtggatgacttcatcaaccgcaagcacggccgc
gccgagctggcctatccgcacccggactaccagtacgacggcctgcagccggtgctggcg
ccgacctacggcatcattctctatcaggaacaggtgatgcagatcgcccaggtcatgggt
ggctataccctcggccaggccgacatgttgcgccgggccatgggcaagaagaagcccgag
gagatggccaagcaacgtggcggcttcatcgaaggttgcgccaacaacggcatcgatgcc
gatctggcgggcaacatcttcgacctggtggagaagttcgccggttacggcttcaacaag
tcgcactcggccgcctacggcctggtctcctaccagaccgcctggctgaagacgcattat
ccggcgccctttatggcggcggtgctgtcggcggacatgcacaacaccgacaaggtggtg
atcctcatcgaggaatgccgccacatgaagctgcgcatcgatacgccggacgtgaacatt
tccgagttcaagttcaccgtcaacgacggcgggcgcatcgtctacggcctgggggcgatc
aagggtgtcggtgagggcccggtagaggccatcgtcgaggcgcgtgccgagggaccgttc
aaggacctcttcgacttctgcgcccgggtcgacctcaagcgaatcaacaagcgtaccctg
gaagccctgatccgctccggtgccctcgaccgtctcgggccgcactaccacgacgagatc
aaggcctatcaggccaccatcgaccagaatcgcgccgtgctgctggcggccatggaagag
gccatcgcctcggccgagcagaccgcacgcagccatgacagcggccacgtcgacctcttc
ggtggggtcttcgccgaacccgaggccgatgtctacgtcaatcatcgtcgggctcgggag
ctcaatctcaaggagcgcctgcgcggcgagaaggaaaccctggggctgtacctgaccggg
caccccatcgaggaatacgaaggcgaggtgcgccgcctggcgcgccagcgcatcgtcgac
ctcaagccgtcgcgcgagacccagaccgtggccgggttgatcgtcaacctgcgggtgatg
aagaacaagcgtggcgacaagatgggcttcgtcaccctggacgaccgttccgggcgcatc
gaggcctcgctgttcgccgaggctttcaacgccgcccaggcgctgctgcagaccgatgcc
ctggtgatcgtcgagggcgaagtcagccaggacgacttctccggcggcctgcgcctgcgc
gccaagcgggtgctgggcctggaagaggcccgtaccgccctggcggaaagcctgaggatc
gccgtgcgcagcgaggcattggcgggtgaccgcctgcgttggctgggcgaactctgcggt
cgccaccgtggcgcctgcccggtgaccatcgactaccagggccccaccgcgcgggccttg
ctgcaattcggtgagaactaccggatcgacccggccgacggcctgattcaaaccctgcgt
gaccagttcggcagggagaacgtctttctcaactatcgttaa
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