Psychrobacillus psychrodurans: ACQCPR_06750
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Entry
ACQCPR_06750 CDS
T11278
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ppsn Psychrobacillus psychrodurans
Pathway
ppsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQCPR_06750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsn03019
]
ACQCPR_06750
Messenger RNA biogenesis [BR:
ppsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACQCPR_06750
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Pantoate_ligase
Gemini_AL1_M
Motif
Other DBs
NCBI-ProteinID:
XSZ06722
LinkDB
All DBs
Position
1444625..1446292
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AA seq
555 aa
AA seq
DB search
MVKVKNELIRIIPLGGVGEIGKAMYVVEIDEEIFVVDSGLMFPENEMLGIDIVIPDITYL
VENKERVKGIFLTHGHEDAIGSISYLLQKVQAPVYGSKLTIALAKTHLKALPTKQPVKFF
EVTNKSRMNFQGTYVTFFHTTHSIPDSLGIVFHTSEGAIVHTGEFKFDQSAKGKYRPDIA
KIAGLGEDGVFILLSDSTEAERPGYTTSEAVIENQLSETFHAAKGRILVALYASNFIRIQ
QVIDKAIETGKKVAIAGKSLENIFEIGLDLGYFNVEEDTMISIKEISKHNDENIVIIVSG
TQGEPLEALEKMIRKHHKDIKIKDTDTVLITFTPSPGMEVGMYNTMNQIAKVGAKVLTSE
KNVHVSGHGSQEDLKMMLNLTKPKYFIPIQGEYRMLMAHSKLAQATGMSKSEIFIADKGD
IVEYKSGKMRMSGRVQAGNILIDGIGVGDVGNIVLRDRKLLSQDGIFIVVVTLNRAQKKI
ASGPEILSRGFVYVRESEELMDESANLVRTVVEKYVNKETFEWTNIKQEIRDTLNSYLFQ
QTKRRPMIIPIIMEY
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaagtaaaaaatgaacttattcgaattataccgctcggtggagttggggaaatc
ggaaaagcaatgtatgtagtagaaatagatgaagaaatatttgtcgtagacagtggatta
atgttcccagaaaatgaaatgctaggaatagatatcgttataccagatattacgtattta
gtggaaaacaaagaacgtgtaaaagggatctttttaacgcatggtcacgaggatgcgatt
ggttctatttcttatttactacagaaggtacaagcaccagtttatggttctaaattgact
atagctctggcaaaaacgcatttaaaggcgttgccgacaaagcaaccagtcaaatttttc
gaagtaacaaacaaaagtcggatgaatttccaaggtacatatgtaacctttttccataca
acgcatagtataccggattcactcggaattgttttccatacttctgaaggggcaattgtt
cacacaggggaatttaagtttgatcaatcggctaaaggaaaatatcgtccggacatagca
aaaatagctggtttaggtgaagatggtgtatttattcttctatctgattcaactgaagca
gaaagaccaggttataccacatcagaagcggtaattgaaaaccaattatcagaaacattc
cacgctgctaaaggacgtatacttgttgctctatatgcatcaaactttatccgtatacaa
caagtaattgacaaagctattgaaactgggaaaaaagttgcgattgcagggaaaagctta
gaaaatatttttgaaattggtttagaccttgggtatttcaatgtagaagaggacacaatg
atttctattaaagaaatctctaaacataatgatgaaaatattgtaatcattgtatctggt
acgcaaggagaaccattagaagctttagaaaaaatgatccgtaaacaccataaagatatt
aaaataaaagatacagatacagtcttaatcacttttactccttctcctggtatggaggta
gggatgtataacacgatgaaccaaattgcaaaagttggagcgaaagtactaacttctgaa
aaaaatgtccatgtttccggtcatggaagtcaagaagatttgaaaatgatgcttaactta
acaaagcctaaatactttataccgatccaaggggaatatcgcatgttgatggcccattcg
aaattggctcaagcaactggaatgtccaaatcggaaattttcattgccgataaaggcgat
attgttgaatataagagcggtaaaatgagaatgagtggtcgagttcaagctggaaacatt
ttaatcgatggaattggtgttggtgatgtaggcaatattgttctgcgcgatcgtaagcta
ctttcacaagatggtatatttattgtagttgttacgttaaacagagcacagaagaaaatt
gcttccgggccagaaattctttcgagaggatttgtctatgttcgtgagtctgaagagcta
atggacgagtctgctaacttagttagaactgttgttgaaaaatatgtgaataaagaaacg
tttgaatggacaaacataaaacaagaaatccgtgatacgctaaattcatatttattccag
caaacaaaaagacgtccaatgatcatcccgattattatggaatattaa
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