Psychrobacillus psychrodurans: ACQCPR_08725
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Entry
ACQCPR_08725 CDS
T11278
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppsn Psychrobacillus psychrodurans
Pathway
ppsn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACQCPR_08725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsn03400
]
ACQCPR_08725
Enzymes [BR:
ppsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACQCPR_08725
DNA repair and recombination proteins [BR:
ppsn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACQCPR_08725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
XSZ07088
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Position
1848587..1850422
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AA seq
611 aa
AA seq
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MMPMLLTASPEIPVGDDWLYEAKYDGFRCILEWDNEPLLKSRNGKLLNDMFPEIIKFCNE
IYNKIKSFLPLTMDGEIVCLINNFQSEFSKVQTRGRMQNFETIKNNAEIFACHYIVFDLL
KYKGKDLTKLSLIKRKQQMARLFNKVQLPISINYQDINKLQMIDVYEENTLLWNTIVSNN
GEGLIAKQKSSTWNSGERTKKWLKIKNWRFISVILTKYDKNNGFFHGALYQKDSLVEITT
FRHGLSEMELSTLTELFQTNGTKLSNNIWELEPSICIEIACIDFDGKKLREPRFHSFNLN
KPIQECNWQQMQKQLYPLPSSTIITHPDKPIWPDAGILKDDYLLYLQRISPYILPFLKDR
LLTVIRFPHGAAGESFYQKNSPDYVPDFVMTKQIEDIKYILCNDLDTLLWLGNQLALEFH
VPFQTVNTTNPTEIVFDLDPPSVHEFSLAVEAAQQMKVIFDQFQLKSYVKTSGGKGIQLY
IPLEEDSFSYEETGIFTKFISEFLVEQEPKWFTTERLKKNRGNKLYLDYVQHKEGKTIIS
PFSPRGNELGLIATPLKWEEVRESLRPDEFLIPHVLDRIKYEGNPFQDFRVGAENERFAI
VLNQLKELVEK
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
ttgatgcccatgcttttaacagcttcgccagaaattcctgtaggagatgattggctgtac
gaagcgaaatatgatggatttcgatgcattttggaatgggataatgagcctttacttaaa
agcagaaacggaaaattactaaacgatatgtttccagaaattattaaattctgtaatgaa
atttataacaaaatcaaatcttttttaccactaacaatggatggggaaatagtatgttta
ataaataactttcaaagtgaattttcaaaggtgcaaactagaggaagaatgcaaaatttc
gagaccattaagaataatgcagaaatatttgcttgtcattatattgtgtttgatttactc
aaatataaaggtaaggatttaactaaactttcattgataaagcgaaagcaacagatggcg
agactgtttaacaaagttcagttgcctatatctataaattatcaagatataaataagcta
cagatgattgatgtttatgaggaaaatacattattgtggaatacaatagtctcaaataat
ggggaaggcttaatcgctaaacaaaaaagcagtacatggaatagcggggaacgcactaaa
aaatggttgaaaattaaaaactggagatttattagtgtcattttaactaagtacgataaa
aataatggattttttcatggtgcactttatcaaaaggactcattagttgaaatcactacg
tttcgtcacggactatctgaaatggagttaagtacgttgacagaattatttcaaacgaat
ggaacaaaactatcgaataatatttgggagttagaaccgtctatttgcatagaaattgcc
tgtattgattttgatggtaaaaagttaagggaaccaagattccattcgtttaatctgaat
aaacctatacaggagtgtaattggcaacaaatgcaaaagcagttatatcctttaccatca
tctactataataactcatcctgataagcctatatggccagatgcgggaatactaaaggat
gattaccttttatatcttcaacgcatatcaccatatattttaccttttttaaaggatagg
cttcttactgttattcgttttccgcatggtgcagcaggtgaaagcttctatcagaaaaat
agtccagattatgttccggattttgttatgacaaagcaaatagaagatattaaatatatt
ttatgtaatgatctagacaccttgctttggttaggaaaccagcttgcattagaatttcat
gttccttttcaaactgtaaatactacaaatcctacagagattgtatttgacttggatcca
ccctcggttcatgagttctcattagcagtggaagctgctcaacagatgaaagttatattt
gatcaatttcagcttaaatcctatgtgaaaacctctggtggaaaaggaattcagttatat
attccactagaggaggatagtttttcgtatgaagaaactggtattttcactaagtttata
tcagagtttttagtagagcaggaaccaaaatggttcactactgaaaggttgaaaaagaat
cgcgggaataaattgtatttggattatgttcaacataaagaagggaaaactatcatttct
ccattttcaccaagagggaacgaattgggacttattgcaactccattgaaatgggaggag
gttagagagtccttgagaccagatgaatttttgattccacatgtgttagaccgtataaaa
tatgaaggaaatccttttcaagacttccgagtgggagcggaaaatgaaagatttgcgatt
gtattaaaccaattaaaagaacttgtagaaaaataa
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