Psychrobacillus psychrodurans: ACQCPR_15350
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Entry
ACQCPR_15350 CDS
T11278
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ppsn Psychrobacillus psychrodurans
Brite
KEGG Orthology (KO) [BR:
ppsn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppsn03009
]
ACQCPR_15350 (rlmD)
Enzymes [BR:
ppsn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACQCPR_15350 (rlmD)
Ribosome biogenesis [BR:
ppsn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACQCPR_15350 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Methyltransf_11
Cons_hypoth95
PrmA
Ubie_methyltran
Methyltransf_32
Methyltransf_4
TRM5-TYW2_MTfase
UPF0020
Methyltransf_12
TPMT
MethyltransfD12
Motif
Other DBs
NCBI-ProteinID:
XSZ04604
LinkDB
All DBs
Position
3099887..3101260
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AA seq
457 aa
AA seq
DB search
MSEKSVIEIGQEFPLTIKRLGINGEGVGFFKRNVVFVKGALPGEVITAKVTVVNPKYAEA
EIKTLRESSPHRVNPPCPVYEACGGCQLQHMTYESQLHVKRDLVLQALERYVKDLAPTID
VRPTIGMENPWNYRNKSQFQVRELGDKVIAGLYAEESNMLIDINECSVQEPATTHITNEI
KRFLEELKISIYDGRNSKGIVRTIVVRTGMKTGQIQVTLVTTQKKMPHKEELVQKIRAID
PNIVSISQNINPEDTSLVFGDTTFNLHGKETIHEKLGELAFDLSARAFFQLNPEQTVHLY
NEIEKAAALTGEETIVDAYCGVGTIGLWLAKNAKEVRGMDIVQESIQDAKKNAKRNGFKN
TKYVHGTAQHWLQKWKSEGFVPDVLTVDPPRAGLDDDLLKTLLDIKPKRFVYTSCNPSTL
AKDLAALKDVYNIKYIQPVDMFAQTAHVEAVTLLELK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaaatcagttatagaaataggacaagaatttccccttacgattaaacgactt
ggtattaacggagaaggcgttggattttttaagcgcaatgttgtttttgtaaaaggagct
cttccaggagaggtaatcactgcaaaggttacagtagtaaaccccaagtatgccgaagct
gaaattaaaacattaagagaatcttctccacatcgtgttaatcccccctgcccggtatat
gaagcttgtggaggatgtcagctgcagcatatgacatatgaaagtcagctacatgttaaa
agagatttagtattacaagctttagaacgttatgtgaaggacctggctccgacaattgat
gtaaggccaactatcggtatggaaaacccatggaattaccgcaataaaagtcagttccaa
gtgagagaattaggcgataaagttattgcagggttatatgcagaagaatccaatatgtta
atcgatattaacgaatgttcggttcaagagccagccactacccatattacaaatgaaata
aaaagattcctggaagaactgaagatttctatctacgatggtagaaattctaaaggaatc
gtccgtacgattgtcgttcgtactggtatgaaaactggacaaattcaagttacacttgta
acaactcaaaagaaaatgccacataaagaagaactagttcaaaaaatacgagcaatcgac
cctaatattgtgtccattagtcagaatattaatccagaggatacttctctggtatttgga
gatacgacatttaacttacatggtaaagaaacgattcatgaaaaacttggagaactagct
tttgacttatctgctagagcttttttccaattgaatccggaacaaacagttcatttatac
aatgaaattgaaaaagcagcagcactcacaggtgaagaaacaattgtagatgcttattgt
ggtgttggtacaataggactttggcttgccaaaaatgcaaaagaagttcgcggaatggat
attgttcaggaatccattcaagacgcgaaaaaaaatgcgaaacgaaatggttttaaaaac
acaaaatacgttcatggtacagcacagcattggttacaaaagtggaaaagcgaaggattc
gttcctgacgtattaacagtagatccacctcgtgcaggcttagatgatgatctgttaaaa
acgttattagatattaaaccaaaacgctttgtttacacttcatgtaacccgtccacactt
gcaaaggatttagcagcgcttaaagatgtatacaacatcaagtatattcaacccgttgat
atgttcgctcaaactgctcatgtcgaagcggtaacgctattagaattaaaataa
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