Parasedimentitalea psychrophila: QPJ95_00635
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Entry
QPJ95_00635 CDS
T09434
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QPJ95_00635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppso03019
]
QPJ95_00635
03009 Ribosome biogenesis [BR:
ppso03009
]
QPJ95_00635
Enzymes [BR:
ppso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QPJ95_00635
Messenger RNA biogenesis [BR:
ppso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QPJ95_00635
Ribosome biogenesis [BR:
ppso03009
]
Prokaryotic type
rRNA helicases
QPJ95_00635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
WIY25497
UniProt:
A0A9Y2L0V9
LinkDB
All DBs
Position
complement(131831..133975)
Genome browser
AA seq
714 aa
AA seq
DB search
MNIVKTALAEALKARGYESLTQVQQEVSNPDLVSKDLLVSAQTGSGKTVGFGLAMAPTLL
GDDEGFGRAASPLALVIAPTRELAMQVKRELEWLYAGAGAHMASTVGGMDMRDERRALDR
GTHIVVATPGRLRDHIMRGSINLSEVRAVVLDEADEMLDLGFREDLEFILGETPETRRTL
MFSATVPKGIARLAETYLKDYERITTVAATSQHADIDYQMLAVSQRDSENAIINVLRYHE
APNALVFCNTRAMVNRLTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRASVCVATDV
AARGIDLPKLDLVVHAELPNSHETLLHRSGRTGRAGRQGVSALIVPPKSRGKAMRLLRAA
KLTAEELNAPSAEAVRGQDEARMLGDATWTEVVTDAEATPVANLLEKFAPEQLAAAYLRL
FHSRHTAPEELGDPGQDKGARKEREPFGPSVWFSISGGRDAGAEPRRLLPMLCKAGNLSK
DDIGAIRVQGQESYVELRQSSVDGFLKALGKPEVEGSKVVKLDKAPDIAHSPRPKFEGSG
PRRDDRKPRGDFKPREDRKPRDDYKPREDRKPRDDFKPREDRKPRDDYKPREDAGKKGGD
AKYGGKSSTPPVDWNDSPAPRSKKPKAGIGKGGGNPSQRMARPGEEHVTPLKRRKTGDSK
PYAGKPGGDSDRKGPPPPKGRADSKKNKARAALAKGGPAKGGGGFAKSKPRKGN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtgaaaacagcactcgcagaggcgctcaaggcgcgcggttacgaatcgttg
acccaggtccagcaagaggtcagcaaccctgatctggtgtctaaggatctgttggtctcg
gcccagactggctcgggcaaaacagtaggatttggtctggcgatggcgccgaccttgctc
ggtgacgacgaaggctttggccgcgccgcatcacccttggcgctggtgattgcacccacg
cgtgaattggcaatgcaggtcaagcgcgagctggaatggctctatgccggcgccggggcc
catatggcctcgaccgttggcggcatggatatgcgcgacgagcgccgggcgctggatcgc
ggcacccatatcgttgtggccacaccgggtcgtttgcgcgaccacatcatgcgcggctcg
atcaacctgtccgaagtgcgcgccgtggtgctggacgaggccgacgagatgctcgacctc
ggtttccgcgaagatctggaattcattctgggcgaaacccctgaaacccgtcgcaccctg
atgttctcggccaccgtgccaaaaggcatcgcgcgtctggctgaaacctatctgaaggat
tacgagcggatcaccaccgttgccgcgacatcgcagcacgcggatattgattatcaaatg
ctggctgtgtctcagcgcgatagcgaaaacgccatcatcaacgtgttgcgctaccacgaa
gcgcccaatgcgctggtgttctgtaacacccgtgcaatggtcaaccgtctgaccacacgc
ctgtcgaaccggggcttctcggtggtggcgctgtcgggcgagctgtcgcaggccgagcgg
tccaacgcgttgcaatccctgcgcgacggtcgtgccagcgtctgcgtggccaccgatgtg
gcggcgcgcggcattgacttgcccaagctggatctggtggttcatgccgaactgccaaac
agccacgaaaccctgctgcaccgctcaggccggactggccgggccggacgccagggtgtc
tctgcgctgatcgtaccacccaagtcacgcggcaaggcgatgcgcctgttgcgggcggcc
aaactcaccgccgaagagctgaacgcgccaagcgccgaagcggttcgtggtcaggacgag
gcccgtatgctgggcgatgcaacctggaccgaagtcgtcaccgacgcagaggccacacca
gtggcaaacctgctggagaagtttgcgcccgaacagctggccgcagcctatctgcgcctg
ttccattcgcgccacactgcgcccgaggaactgggtgatcccggtcaggacaagggcgcc
cgcaaagagcgcgagccgtttggtccttcggtctggttctcgatttccggtggtcgcgat
gcgggcgctgaaccgcgtcgtttgctgccgatgctgtgcaaggcaggcaacctgtccaag
gacgatatcggcgccatccgggtgcagggccaagaaagctatgttgagctgcgccagagc
agtgtcgatggcttcctcaaggcactgggcaaacctgaagttgaaggctccaaggttgtc
aagctggacaaggccccggatatcgcccattcgccacgccccaaatttgagggcagcggc
ccgcgtcgcgatgatcgcaagccccgtggcgactttaagccacgcgaagatcgcaaaccg
cgcgacgattataagccacgcgaagatcgcaagccgcgtgacgatttcaagcctcgcgaa
gatcgcaaaccgcgtgacgactacaaaccgcgcgaggatgcgggtaagaagggtggcgac
gccaaatatggcggcaaatcgtcgacccctccggtcgattggaacgattcccctgcgccc
cgctcgaaaaaacccaaggcagggatcggcaaaggtggcggcaacccgtctcagcgcatg
gcgcgtccgggtgaagaacacgtcacgccgctgaaacggcgcaagactggcgacagtaag
ccctatgccggtaagcccggcggcgacagtgaccgcaaaggtccgcccccccccaagggc
cgggctgacagcaaaaagaacaaggcccgtgcggcgctggccaagggaggccccgccaaa
ggtggcggcggtttcgccaagagcaagcctcgcaaggggaactga
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