Parasedimentitalea psychrophila: QPJ95_07855
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Entry
QPJ95_07855 CDS
T09434
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QPJ95_07855 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppso03021
]
QPJ95_07855 (rho)
03019 Messenger RNA biogenesis [BR:
ppso03019
]
QPJ95_07855 (rho)
Transcription machinery [BR:
ppso03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QPJ95_07855 (rho)
Messenger RNA biogenesis [BR:
ppso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QPJ95_07855 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_22
S1CSD-TOTE-2
NACHT
AAA_25
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
WIY26818
UniProt:
A0A9Y2L1Y1
LinkDB
All DBs
Position
1627220..1628491
Genome browser
AA seq
423 aa
AA seq
DB search
MTVETLSLAILKAKSPKLLLAMAEELEIENASTMRKGEMMFQILRERADEGWEISGDGVL
ELLQDGFGFLRSPMANYLPGPDDIYVSPEMIRMHSLRTGDTIDGVMKAPQEAERYFALTT
VTLINFEDPEKARHKIAFDNLTPLYPDERLKMEVEDTPGKDRSARVIDLVAPIGKGQRSL
VVAPPRTGKTMILQNIAHSIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEP
ATRHVAVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKIADKRVY
PAIDILKSGTRKEELLVNKVDLTKTFVLRRILNPMGPTDAIEFLLSKLKQTKSNSDFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcgaaactctgagtcttgccatcctaaaggcaaaaagcccgaaattacttctg
gcgatggccgaagagctggaaatcgaaaacgcctcgaccatgcgtaagggcgagatgatg
ttccagattttgcgtgaacgcgctgatgaaggctgggaaatttctggtgacggcgtgctg
gagctgctgcaagacggttttggcttcctgcgctcgccgatggccaattatctgccgggc
ccggatgatatctatgtgtcgcccgaaatgatccgcatgcactctttgcgcaccggtgac
accattgatggggtgatgaaggcgccacaagaggctgagcgttattttgccctgacgacg
gttacactgatcaatttcgaagaccccgaaaaggcccgtcacaagattgcttttgacaat
ctcacgccgttgtatccggatgaacgactgaagatggaggtcgaggatacgcctggcaaa
gaccggtctgcgcgtgtgattgatttggtggcgccaattggtaaaggtcagcggtcattg
gttgtggcaccgccacggaccggtaagacgatgatcctgcaaaacattgctcactcgatc
gaaaaaaatcaccccgagtgttacctgattgtgctgttgattgacgagcggccagaagaa
gtcaccgacatgcagcgctcggttaaaggtgaagtcgtatcgtcgacctttgacgaaccc
gccacgcgccacgttgccgttgccgaaatggtcatcgagaaagccaaacgtctggttgaa
cataaacgagatgtagtgattcttctcgactcgatcacaagacttggtagggcctttaac
actgttgtgccatcctcgggcaaggttctgaccggtggtgtggatgccaacgcgctgcaa
cggcccaagagattctttggtgccgcccgaaatatcgaagaaggtggctctttgacaatc
atcgccaccgccttgatcgacactggatcccgtatggatgaggtgatctttgaggaattc
aaaggcaccggtaactcggaaattgttctggatcgcaagatcgctgacaaacgtgtctat
ccggccatcgatattctcaaatccggcacccgcaaagaagaactgctggtcaataaggtc
gatttgaccaagacctttgttctgcgtcggattctgaacccaatggggccaacggatgcg
attgagttcctgctgtccaagctgaagcaaaccaagtcgaacagcgatttcttcgactcg
atgaacacctga
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