Parasedimentitalea psychrophila: QPJ95_08925
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Entry
QPJ95_08925 CDS
T09434
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QPJ95_08925 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppso03019
]
QPJ95_08925 (pnp)
03016 Transfer RNA biogenesis [BR:
ppso03016
]
QPJ95_08925 (pnp)
Enzymes [BR:
ppso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
QPJ95_08925 (pnp)
Messenger RNA biogenesis [BR:
ppso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QPJ95_08925 (pnp)
Transfer RNA biogenesis [BR:
ppso03016
]
Prokaryotic type
tRNA degradation factors
QPJ95_08925 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WIY27019
UniProt:
A0A9Y2L4Z6
LinkDB
All DBs
Position
complement(1848081..1850204)
Genome browser
AA seq
707 aa
AA seq
DB search
MFNVTKKSIQWGEDTLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIANCRVGFEDGEYVLNPTVDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVNFAHEQIQPVLDLIISLAEDCAKEPFDFA
APDYSDLSAAVKAAGDTEMRAAFAISDKQERTSAVSAARDTIKAALSPEQLDDANLGSAL
KKLEAGILRGDVVKTGIRIDGRKTDEIRPIVSETGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVSGPGRREIGHGKLAWRALQAVLPA
STDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLILEEDGSYA
ILSDILGDEDHLGDMDFKVAGTAKGITSLQMDIKIAGITPEIMEKALEQAKVGRVHILGE
MANALTEASDFSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGIIKI
ASPNAESIKKAYDMIYSIVAEPEEGAIYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQTTGEEIKGEE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgtaactaagaaatcgatccagtggggcgaagacacgctgacactggaaacc
ggcaaagtagcccgtcaggctgacggctcggtgatcgccactctgggcgagacctcagtc
atggccaacgtgacttttgcccgcaagcaaaaacccggccaggacttcttccccctgacc
gtgcattaccaagaaaaatactatgccgccggtaaagtaccgggtggcttcttcaagcgt
gaggcccgccccaccgagaaggaaacactgactgcacgtctgatcgaccgtccgatccgt
ccgctgtttgtccctggcttcaaaaacgaagttctggtgatgtgcaccgtgctgtcccac
gatctggtcaacgaccctgatatggttgcaatgatcgctgcttcggctgctctgaccatt
tccggtgctccgttcatgggcccgatcgccaactgtcgcgttggctttgaagatggcgaa
tatgttctcaacccaactgttgacgacatgcaggacctgcgcctgaacccagaacagcgt
ctggatctggttgtggccggcaccaaagacgccgtgatgatggttgaatccgaagcttac
gagctgtccgaagctgaaatgctgggcgccgtcaactttgcccatgagcagatccagccg
gttctggacctgatcatctcgctggccgaagactgcgccaaagagccgttcgactttgcc
gctccggattactcggatctgtccgcagccgttaaggccgctggcgacaccgaaatgcgc
gccgcctttgcgatcagcgacaagcaagagcggacctcagctgtttcggctgcccgcgac
accatcaaggctgccctgagccctgagcaactggacgacgcgaaccttggttccgctctg
aaaaagctcgaagctggcatcctgcgtggcgacgttgtcaaaaccggcatccgtatcgac
ggtcgtaaaaccgacgagatccgcccaatcgtttcggaaaccggcctgctgccgcggacc
cacggttcggcactgttcacccgtggcgaaactcagggtctggttgtcaccactctgggt
accggagacgacgagcagttcatcgacgcgctgcacggcaacttcaaatccaacttcctg
ctgcactataacttccctccctattcggttggtgaagtgggtcgcgtcagtggtcctggc
cgtcgtgaaatcggtcacggtaaactggcatggcgtgcgcttcaggcggttctgcctgct
tcgactgatttcccctacaccatccgtctggtgtccgagatcaccgaatcaaacggttca
agctcgatggcttctgtctgcggcggctcgctgtcgatgatggacgctggtgtgcctctg
aaagctgccgttgccggcgttgcaatgggtctgatcctggaagaagacggatcttatgcg
atcctgtccgacatcctgggtgacgaagatcacctcggcgacatggacttcaaagtggcc
ggtaccgcaaaaggtatcacctcgctgcagatggacatcaagattgccggcatcacaccg
gaaatcatggaaaaagccctggagcaggccaaagttggccgtgttcacatcctgggcgag
atggccaacgcactgaccgaagcctctgacttctcggttcacgcgccgcgcatcgaaacc
atgcaggttccaaccgataagatccgtgaagtgatcggctcgggtggtaaagtgatccgc
gaaatcgttgaagtgtccggcgccaaagtcgacatcaacgacgacggcatcatcaagatc
gcttcgccaaacgcggaatcgatcaaaaaggcctatgacatgatctattcgatcgtggct
gagcctgaagaaggtgccatctacaccggtaaagttgtcaaaatcgtcgatttcggcgct
ttcgtgaacttcttcggcaagcgcgacggcctggtgcatgtgtcccagatcgaaaaccgc
cgcctgaaccacccttcggacgttctgaaggaaggccaggaagtgaaagtcaaactgctg
ggctttgacgatcgcggcaaggttcgcctgtcgatgaagatcgttgaccagacaactggc
gaagagatcaagggcgaagagtaa
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