Parasedimentitalea psychrophila: QPJ95_10170
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Entry
QPJ95_10170 CDS
T09434
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QPJ95_10170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppso03021
]
QPJ95_10170 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppso03400
]
QPJ95_10170 (rpoC)
Enzymes [BR:
ppso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QPJ95_10170 (rpoC)
Transcription machinery [BR:
ppso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QPJ95_10170 (rpoC)
DNA repair and recombination proteins [BR:
ppso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QPJ95_10170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7022
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WIY27244
UniProt:
A0A9Y2L5E0
LinkDB
All DBs
Position
2104891..2109135
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEFMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEAEAEQLRADLAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLDRKGMPGEGMVFASLEEVQHAL
DAKLVHLHTRITARVTQIDEEGNEVFERFETTPGRMLLGDLLPKNAKAPFSLVNRLLRKK
EVQTVIDTVYRYCGQKESVIFCDQIMTMGFRESFKAGISFGKDDMLIPDSKWPLVNATRG
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGAISAANYDESGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLSVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRDHDCGTDTAITAVAAVNDGEVVATLGERVLGRV
AAEDIKKPGTEDVLVALGTLIDERMADAIEEAGVRSARLRSPLTCEAEEGVCVMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQAGQQSFQEATVDGTIVFENAQ
TLTNASGEVMVLGRSMKLIIQDEHGEDRATHKLAYGSKLFVSQGQQVARGLKLYEWDPYT
LPILAEKAGTVKYVDLINGIALREETDEATGMTQKIVVDWRTAPKGGELKPELILVDKDG
EPVRNELGHPVHYGMSVDAVLSIEDGDEVQAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMETVEYMVPKGKHIPVQEGDFIA
KGEYLMDGNPAPHDILAVMGVEALANYMVDEVQDVYRLQGVKINDKHIEVIVRQMLQKLE
VLDSGDTTLLKGEHVDKHEFDAACEKAVAKKGRPARGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATDRVRNIAQDRDNVVLDARRL
EAEAAAALAAPVMDEDIIGGDVFDNLVDTPESRD
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaataacccgttcaatccgctgacaccccccaaggtgttcgac
gagatcaaagtctcgctggcctcgccagagcggatcctgtcgtggtcgtatggcgaaatc
aaaaagccagaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgc
gcacgtatctttggcccgatcaaagactatgagtgcctgtgcggcaaatataagcgcatg
aagtatcgcggcgttgtctgcgaaaaatgtggtgttgaagtcacgctgcaaaaggtccgc
cgcgagcgtatgggccacatcgagctggcctcgccggttgcgcatatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgactctgcgtgatctggagcgggtt
ctctactttgagaactacgtggtgatcgaacccggtctgaccgatctgacctatggccag
atgatgaccgaagaagagttcatggacgcccaggatgcctatggcatggatgctttcacc
gccaatatcggcgccgaagcgatccgtgaaatgctggcagcgattgatctggaagccgaa
gctgagcagctgcgcgccgatctggccgaagccaccggtgagctgaagcccaagaagatc
atcaaacgtctgaaggtcgttgagtccttcctcgagtcgggcaaccgccctgagtggatg
gttctgactgttattccggtaattccaccagagctgcgcccgctggtgccgctggatggt
ggccgctttgcgacctcggatctgaacgatctgtatcgccgggtgatcaaccggaacaac
cgcctgaagcgtctgattgagctgcgcgcccctgatatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggttgatgctctgtttgacaacggccgtcgcggccgcgttatcact
ggcgccaacaagcgtccgttgaaatcgctgtccgacatgctgaagggtaagcagggtcgc
ttccgtcagaaccttttgggcaaacgcgtcgacttctcgggtcgttcggttattgtgacc
ggcccagagctgaagctgcaccaatgtggtctgccgaaaaagatggcgctggaactgttc
aagccgttcatctattcgcgccttgaagccaaaggtctgtcttccactgtgaagcaagcc
aagaagctggtggaaaaagagcgtcccgaagtctgggatatcctggacgaagtgatccgc
gaacacccggtcatgctgaaccgtgcaccaacactgcaccgtcttggtatccaggcgttt
gaaccgatcctgatcgaaggtaaggccatccagctgcacccactggtctgctcggcgttc
aacgctgactttgacggtgaccagatggcggttcacgttccgctgagccttgaggcccag
ctggaagcccgcgtgttgatgatgtcgaccaacaacgttctgtcgcctgccaacggcgcg
ccgatcattgttccgtcgcaggatatgatcctgggtctgtactatgtgacgctggaccgc
aaaggcatgccgggcgaaggcatggtgtttgcctcgctggaagaggttcagcacgcattg
gacgctaaactggtgcacttgcacaccagaatcaccgctcgggtgacgcagatcgacgaa
gaaggcaacgaagtgttcgagcgctttgaaaccactccgggtcggatgttgctgggcgat
ttgctgcccaagaacgccaaggctccgttctcgctggtcaaccgtctgctgcgtaagaaa
gaagtccagactgtcattgataccgtctaccggtattgcggtcagaaagaatcggtcatc
ttctgcgatcagatcatgaccatgggtttccgtgaatcgttcaaagccggtatttccttc
ggtaaggacgacatgctgatcccggactcaaaatggccgctggtgaatgctacccgcggt
caggtgaaggattttgaacagcagtatatggacggcctgatcactcagggcgaaaaatac
aacaaagttgttgatgcctggtccaagtgtaacgacaaggtcaccgacgcgatgatggga
gccatctcggctgccaactatgacgagtccggttctgagatggaaccgaactcggtctat
atgatggcgcactccggtgcgcgtggctcggtcactcagatgaaacagctgggcggtatg
cgcgggttgatggcaaagccaaacggcgacatcatcgaaaccccgatcatctcgaacttt
aaagaaggtctgtccgtgttggagtacttcaactccacccacggtgcccgtaagggtctg
tcagatacggctttgaaaacagcgaactcgggctatctgacccgtcgtctggttgacgtg
gcgcaggattgtatcgttcgcgatcatgactgtggcaccgacacggcaatcaccgcggtg
gcggctgtcaacgatggtgaggttgttgcaactctcggcgaacgtgtccttggtcgtgtt
gcggctgaagacatcaagaagccaggcaccgaagacgtgcttgtggctctgggtacattg
atcgacgaacgtatggccgatgccatcgaagaggcgggtgttcggtctgcccggcttcgt
agcccgctgacatgtgaggccgaagaaggcgtctgtgtcatgtgctacggtcgtgatctg
gcccgcggcaccatggtgaacaccggcgaagccgtcggtatcatcgcggcgcagtcgatt
ggggaacctggcacacagctgaccatgcggaccttccacattggtggcgttgcgcaggct
ggtcagcagtcgttccaggaagcaactgtcgatggtaccatcgtctttgagaacgcgcag
accctgaccaatgccagtggcgaagtcatggttctgggccgcagcatgaagctgatcatc
caggatgagcacggtgaagatcgggcgacccacaaactggcctatggttccaaactgttc
gtgtcccagggtcagcaagtggcccgcggtctcaaactgtacgaatgggatccctacaca
ctgccaatcctcgctgaaaaagcaggtacggttaagtatgtggacctgatcaacggtatc
gctctgcgcgaagaaaccgatgaagccaccgggatgacacagaagatcgttgtcgattgg
cggacagctcccaaaggcggcgagctgaagccggaacttattctggtcgacaaagatggc
gaaccagtgcgcaatgagttggggcacccggttcactatggcatgtcggttgacgcggtt
ctgtcgatcgaagacggggacgaagttcaggccggtgacgttattgcgcgtatcccgcgt
gaaggcgccaagaccaaggacatcaccggtggtctgccacgggttgcggaactgttcgaa
gcccgtcgtcccaaggatcacgcaatcatcgccgaaatcgatggctacgtgcgctttggt
cgcgactacaagaacaagcgccggatctcgattgagccagcggatgagtcaatggaaacc
gtggaatacatggtgcccaagggcaagcacatcccggttcaggaaggtgacttcatcgcc
aagggtgaatacctgatggacggcaacccggcaccgcatgacattcttgcggttatgggt
gtcgaagcactggccaactacatggttgacgaagtgcaggacgtttaccgtctgcagggc
gtgaagatcaacgataagcacatcgaagttatcgtgcgtcagatgctgcagaagttggaa
gttctggacagcggtgacaccaccctgctcaagggcgaacacgtcgacaagcacgagttc
gatgcggcctgtgaaaaggctgtggccaaaaaaggccgtccggcccgtggcgagccgatc
ctgcttgggatcaccaaggcttcgctgcagacccggtcgttcatctcggcggcatcgttc
caggaaaccacgcgggttctgaccgaggcatcggtgcagggcaagcgcgacaaactggtc
ggtctgaaagagaacgtcatcgttggccgtctgatcccagccggcaccggtggtgccacc
gatcgtgtgcgcaacattgctcaggaccgcgacaatgtggtgctcgacgcgcgccgccta
gaggccgaagccgcggcagccctggcggctccggtgatggacgaggatatcatcggtggt
gatgtgttcgacaatctggtggatactccagagagccgcgattga
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integrated database retrieval system
