Parasedimentitalea psychrophila: QPJ95_14390
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Entry
QPJ95_14390 CDS
T09434
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QPJ95_14390 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppso03021
]
QPJ95_14390 (rpoD)
Transcription machinery [BR:
ppso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QPJ95_14390 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5098
Med21
Motif
Other DBs
NCBI-ProteinID:
WIY23827
UniProt:
A0A9Y2KY04
LinkDB
All DBs
Position
2948855..2950849
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AA seq
664 aa
AA seq
DB search
MAAKDTDDRKRDDQEPETSLDMSQAAVKKMISEAREKGYITYDQLNKVLPPDQVGSEQIE
DVMSMLSEMGINIIEDEEAEEEEQKGSTDLVTADGAREVTIATAASEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLTEDILLRDVI
DLETTFGNTMNEDGTPQDSVTAPTDAAKTEKPEAEAGTVLDADGNPISQDDDDDDDEDDQ
ANLSLAAMEAALKDQVLTMLERISSDYSQLSEMQDSRISATLNEDGSFSAKDEEVYQALR
SEIVELVNELHLHNNRIDALIDQLYGINRRVMQIDGSMVKLADQARINRREFVDAYRGRE
LDPNWLAEMGQKPGRGWKMFIDRSTEKVEELRAEIAQVGQYVGLDISEFRRIVQQVQKGE
KEARAAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
YATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQM
PLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLA
SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS
FLDQ
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacaccgacgaccgcaaacgtgacgaccaggaacctgaaacctcgctg
gacatgagtcaggctgccgtcaaaaagatgatctctgaggcccgcgagaagggctatatc
acctatgaccagctgaataaggttttgccacccgatcaggtgggctcggaacagatcgaa
gacgtgatgtcgatgctctcggaaatgggcatcaatatcatcgaggacgaggaagccgaa
gaggaagagcaaaagggctcgaccgatctggtcaccgctgacggcgcccgtgaagttacc
atcgccaccgccgcgtctgagaagctggaccgcaccgatgatccggtgcgcatgtacctg
cgcgagatgggctcggttgagctgctcagccgcgagggcgagatcgccatcgccaagcgc
atcgaggccggccgcaatacgatgatcgccgggctgtgcgaaagcccgctgacctttcag
gcgatcaccatctggcatgatgaactgctgaccgaagacattctgctgcgcgacgtcatt
gatctggaaaccacttttggcaacacgatgaatgaggacggaacacctcaggattcggtg
accgcccccacggatgccgccaagaccgaaaagcccgaggctgaggctggcaccgtgctg
gatgccgacggcaatccgatcagccaggacgatgacgacgacgatgacgaggacgatcag
gccaacctgtcgctggctgcgatggaagccgcgctcaaggatcaggttctgaccatgttg
gagcggatctcttcggattattcgcaactgtcggaaatgcaggacagccggatttcggca
accctgaacgaagacggctcctttagcgccaaagacgaagaggtctatcaggcgctgcgc
tcggaaatcgttgagctggtgaacgagcttcacctgcataacaaccggatcgacgcgctg
atcgaccagctgtacggcatcaaccgccgggtcatgcagattgacggctcgatggtgaaa
ctggccgaccaggcccgcatcaaccgtcgcgaatttgttgacgcttatcggggccgcgag
ctggaccccaactggctggcggaaatgggccaaaagccgggccgtggctggaagatgttc
atcgaccgctccaccgagaaagtcgaagagctgcgcgccgaaatcgcccaggtcggccag
tatgtcggtctggatatctcggaattccgccgcattgtgcaacaggtgcaaaaaggcgaa
aaagaagcgcgggccgccaagaaggaaatggtcgaggccaacctgcgtctggtgatctca
atcgccaagaaatacaccaaccgcggcttgcagttcctggatctgatccaggaaggtaac
atcggcctgatgaaggcggtggacaagtttgaataccgccgtggctacaagttctcgacc
tatgcgacctggtggatccgccaggcgatcacccgctcgatcgccgatcaggcccgcacc
atccgtattccggtgcatatgatcgagaccatcaacaagctggtccgcaccggtcgccag
atgctgcacgaaatcggtcgcgaaccgacgccggaagaactggccgccaagctgcaaatg
ccgctggagaaggttcgcaaggtgatgaagatcgccaaagagccgatttcactggaaacc
ccgattggtgacgaagaagacagccagctgggtgatttcatcgaggacaagaatgccgtg
ctgccgctcgacagcgccattcaggaaaacctcaaggaaaccactactcgcgtgctggcc
tcgctcaccccgcgtgaggaacgtgtgctgcggatgcgctttggcatcggcatgaacacc
gaccacacgctggaagaagtcggccagcagttctcggtaacccgcgaacggattcgtcag
atcgaggccaaggcgctgcggaaactgaagcatccaagccgaagcaggaaactgcggagt
ttcttggatcagtga
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