Parasedimentitalea psychrophila: QPJ95_23845
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Entry
QPJ95_23845 CDS
T09434
Name
(GenBank) type VI secretion system contractile sheath large subunit
Organism
ppso
Parasedimentitalea psychrophila
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
T6SS_VipA
Motif
Other DBs
NCBI-ProteinID:
WIY27821
UniProt:
A0A9Y2L339
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Position
pQS-2:57180..60428
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AA seq
1082 aa
AA seq
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MAAALSSLRDVELPQAEVDQSGDILAGLSARAPEETAKADDLGSALSSLAAVEIEETPAD
DSTDILGDLAAQELVEAVDTSTDDALSSLAAVEVDEAPEDDSADILGDLAAQDVAEAVDT
SSDDALSSLAAVEVDEAPEDDSADILGDLAAQDVAEAVDTSSDDALSSLAAVEIDETPED
DGTDILGDLAAQDLAEAVDTSSDDALSSLAAVEVDEAPEDDSADILGDLAALDVVEEVDT
SSDDALSSLAAVEIGEGPEDDGADILGDLAALDLAEEVDTSSDDALSRLAAVEIDEAPED
DSADILGDLAALDVAEEVDTGADDLSALLGGLDDVATPQDNIDDILGGLGDLGAEETDAP
LDAGGLDDLLGDLEAADAETEEADAQGLDDLLGDLSDAEDGDDLDGLFADLEDDAAAEPE
GGDGLDDLLGDLTGADDSGLDALLGDTSEGEDGDLDLDDLLGSLEDDSPEAGDDLDDLLG
ALDSTDDSTDDGAAEAAEAVKLSQTEEPEFAYGTLSASRPEPQRLVRKRFRLAILGDFSG
RAAKGIVEIGDQLAARRAVILDPDTVEDVIESFATELVLPIGRDGAGMAVKLGGLDDLHP
DELYENVELFSELVGLRKQLQSGVTADHAASTLRAWGEKHGTRVSPPKPRSGGNAVPADC
RLSAFQLLVGDAENQLGQVSPVQDLLARVVGPHIRALPNADVAAMIVAVDAALSDAMRMV
LHHPEFQSLEAQWRSLDLIARSVEDDDTLDVMLYDISAEELAADLTASEDLSDSGFVKLL
TGEPLDEENGRGGYSALIGLYQFEETPPHAELLGRIARVAAHVDAPFLAGISPAFLETEK
DKLPSVVTKAWDTLRGMGEAGHLGLVSPRFMLRRPYGAKSEPIYEFQFEEFTESEGLRGL
LWANPVVLAAILLARSFKQNGASMGLGQIMSLGDIPFHYVNDRFGDQVALPCTERNINLD
KIALAQERGFMAVSAIKGRDEIRLTSFGSLAGGDILGPWTGMPAPDPSPPDPKPAAAADP
AGDDLDDLGLDDLDLDLGLDDDDSGLGDLDDLLAGFGDDTDDSGEDDDDSMDADLAALLD
DL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcactgtccagcctgcgcgacgttgagctgccgcaggcagaggttgaccaa
agcggcgatattctggctggcctgagcgcgcgcgcgccggaagagaccgctaaagcggat
gatctggggtcggctctgtccagtctggcagcggttgagattgaggagacgcctgctgat
gacagcaccgatatactgggcgacctcgcggcgcaggagttggtcgaagcggtcgacacc
agcactgatgatgcgctgagcagtctggcggcggttgaggtcgacgaggctcctgaggac
gacagcgctgatatactgggcgacctcgcggcgcaggatgtggccgaggcggtcgacacc
agctctgatgatgcgctgagcagtctggcggcggttgaggtcgacgaggctcctgaggac
gacagcgccgatatactgggcgacctcgcggcgcaggatgtggccgaggcggtcgacacc
agctctgatgatgcgctgagcagtctggcggcggttgagattgacgagacgcctgaggat
gacggcaccgatatattgggcgaccttgcggcgcaggatctggccgaggcggtcgatacc
agctctgatgacgcgctgagcagtctggcggcggttgaggtcgacgaggctcctgaggac
gacagcgctgatatactgggcgacctcgcggcgttggatgtggtcgaggaggtcgacacc
agttccgatgacgcgttgagcagcctggcggcggttgagattggcgagggtcccgaggac
gacggcgccgatatactgggcgaccttgcggcgctggatctggccgaggaggtcgatacc
agttccgatgacgcgttgagcaggctggcagcggttgagattgacgaggctcctgaggac
gacagcgctgatatactgggcgaccttgcggcgctggatgtggcggaggaggtcgataca
ggggctgatgatctgtcggctttgctgggcgggctggacgatgtggcgacgccccaagac
aatatagatgacattctgggcggtttgggcgacctgggtgccgaggagaccgacgcgccc
ttggatgctggtgggctggatgacctgttgggagatctggaggccgccgatgccgaaacc
gaagaggcggacgcgcaagggctggacgatctgttgggcgacctgtcggatgccgaggac
ggggatgatctggatgggttgttcgctgacctggaagacgatgccgcagccgagccggag
ggcggtgatggccttgatgatttgctgggcgatctgaccggggcggatgacagcgggctt
gatgcgctgctgggcgacacctccgagggtgaggacggtgatttggatctggacgatctt
ttgggatcgttggaggatgacagccctgaggcgggggatgatttagacgatcttctgggt
gcgttggacagtactgatgacagtaccgatgacggtgcggcagaggctgcggaggcagtg
aaactcagccagaccgaagagcctgaatttgcctatggcaccctcagtgcgagccgacct
gagccgcagcgattggtacgcaagcggttccgactggccatccttggggatttctcgggg
cgggcggcgaaaggcattgtcgagatcggagatcagttggcggcgcgtcgggcggtcatt
ctggacccggatactgttgaagacgtgattgaaagttttgccaccgaattggtgttgccg
attggccgggatggcgctggcatggcggtgaagctgggcgggctggacgatctgcacccg
gatgagctgtacgaaaacgtcgagctgttttccgagttggtcgggctgcgcaagcaattg
caaagcggggtgacggcggatcatgcggccagcacacttcgcgcctggggtgagaaacac
ggcacccgcgtcagccctccgaaaccacgctccggcggcaatgcggtgcctgcggattgc
cggttgagcgcgtttcagctgttggttggcgatgccgagaaccagttggggcaggtctcg
ccggtgcaggatctgctggcgcgggtggttggcccgcatattcgggcgctgcccaatgcg
gatgtggccgcaatgattgtggcggtggacgcggcgctgtcggatgccatgcgcatggtg
ttgcaccacccggagttccagtcgctggaggcgcagtggcggtcgctggatttgatcgcg
cgatcggttgaggacgacgacacgctggacgtgatgctatatgatatctcggccgaggaa
ctggcggcagatttgaccgcgagtgaggatctgagcgacagcggtttcgtcaagttgctg
accggtgagccgctggacgaggaaaacggacgcggcggatattcggcgctgatcgggttg
tatcagtttgaggaaaccccgccccatgcggaattgctgggccggattgcgcgggttgcg
gcgcatgtggatgcgcctttcctggccggaatatcgcctgcattcctggagacggaaaaa
gacaaactgccatccgtggtgactaaggcctgggatacgctgcggggcatgggtgaggct
gggcatttgggtctggtgtcgccacgctttatgctgcgccgtccatatggcgccaagagc
gagccgatctatgagttccagtttgaggaattcaccgaaagcgaaggtctgcgcggcctg
ctttgggccaacccggtggtgctggcggcgatccttttggcgcgctcgttcaaacagaac
ggggcctcgatggggctggggcagatcatgtcgctgggtgacattccgttccactatgtc
aacgaccgatttggcgatcaggtggcgctgccctgcaccgagcgcaatataaatctggac
aaaatcgcgctggcacaggagcgcggatttatggcggtgtcggcgatcaaaggacgggat
gaaatccgcctgacctcgtttggctcgctggcgggcggggatattctggggccctggaca
ggcatgccagcgccggacccgtcgccgccggatccaaaacccgccgctgcggctgacccg
gctggcgatgatcttgacgatctggggctggacgatctggatctggaccttggccttgat
gacgatgatagtggtctgggtgatcttgacgatcttctggctggatttggcgatgatacc
gatgacagcggcgaggatgacgatgacagtatggatgccgatcttgctgcgctgttggac
gatttatga
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