Podospora pseudopauciseta: QC763_101880
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Entry
QC763_101880 CDS
T09815
Symbol
RAD50
Name
(RefSeq) DNA repair protein rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03440
Homologous recombination
ppsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QC763_101880 (RAD50)
03450 Non-homologous end-joining
QC763_101880 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsp03032
]
QC763_101880 (RAD50)
03400 DNA repair and recombination proteins [BR:
ppsp03400
]
QC763_101880 (RAD50)
DNA replication proteins [BR:
ppsp03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
QC763_101880 (RAD50)
DNA repair and recombination proteins [BR:
ppsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
QC763_101880 (RAD50)
BRCA1-C complex
QC763_101880 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
QC763_101880 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
AAA_13
AAA_29
MazE-like
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
87927086
NCBI-ProteinID:
XP_062769622
LinkDB
All DBs
Position
1:737954..743788
Genome browser
AA seq
1320 aa
AA seq
DB search
MSRIEKLSILGVRSFSPHEQQAIAFNTPLTLIVGYNGSGKTTVIECLKYATTGELPPNSK
GGAFIHEPELEGEKDVRAQVKVSFRSTIGEQYVLTRNVQLTVKKTTRSMKTLEGSLLLRG
QAGGKSSDRHVISTRVMELDKLVPEKLGVSPAVLEAVIFCHQDESMWPMSEPSALKKRFD
EIFEAMKYTKVIDNLKVLRKRKGEELRELKIQETQDKVNKERADKVGRLIIQMSQEIEEA
QTKCSDILKQMGAKAKEIKDKHEQANSFLKIVNDLQNKTEKLEYKSEAIRELRSRIEELP
DSDDVLRNTLAEYAQTIERTVADRDRKQAQQQELQADLKQSRDKHTAKVAEQGKHQSDKD
KYERQLATRDRMVHEAAERHEIRGYDGDLDGDLIKSFYERIQKALNDKKRELERLQKSNA
EELDKKSSVIAELEGRKQSLNRDRASAKQRIMAIGRESATVQGELGSLDVDEGSEAALRA
EMKEVEARIEAAKADEQSADLDGQIKKVQDEIWQLETQAAKLGRELVECTRLASERAQLD
LRKKQLTDRRRDLDILKNTWSEQLSALLGANWTPDTVEAEFQSALRKQDGVVAEARKQKD
ATQQELKQVEYKLSTTRDRHTKLLTEMKSCQHDVLKALRATRDENDPEHPPLDNYEAQTK
HVETELAQIESDLKLTEEMKTYYTKVKTIAEKHNKCNLCDRDFHNQEDVKRRVFNKIAKA
LGDEVKQELEVDKADFAARLRQLKAVRAQYDTYGRLEKEVPTLSAELNVCTTQKEDLVRR
LEDKDLAFGKAEEQRREMDSLSKNVLKISQNHKDIQEAERQVERSQQSSSVTTRSPDEIN
EEQTTCAEQTRVAQTRLNKLTVERQRLKDLASQLEVERLELRHKIATAAQQLERKKSLQD
QIRRFKEEQAQLRESVQTADNDLEALEPEMATARSALDEVRQHGRAKEQKVTEKRDAIGG
TVSELRMINGEIQEYLERGGPSNLASNQRAITTLEATIASIEAEMKDLTVQINKLNKEID
NSDAKKRNISDNLTYRKNLRERVALQQEIEELKSRKAEEDYQRLSLEARILEDQRGLLTA
ERERLMGNVASKDDQLSRLQEEYDLDLKGAKAKYKESHIKVETTKAAIDDLGRGTMALDH
AIMQFHSLKMEEINRIIGELWRETYQGTDIDTIQIRSDVESGAGSGGGGKRNYNYRVSMV
KGDTEMDMRGRCSAGQKVLASIIIRLALAESFGVNCGLIALDEPTTNLDSDNIRSLASSL
HRIIKARQSQGNLQLIVITHDEEFLKHMRCQDFCDTFYRVERNARQNSVIRVENITRISE
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggatcgagaagctgtccatcttgggcgtgcgctcattcagtccccatgagcag
caggccatcgcttttaacacaccgctcaccctgattgtcgggtacaatggttcgggcaag
acgactgtgatcgaatgcctcaaatatgccaccacgggtgagctcccgcccaacagtaaa
ggcggtgcctttatccatgagcctgagctggaaggcgaaaaggatgtgcgcgcccaggtc
aaggtgtcgttcagatcaaccatcggagagcagtatgtcttgactcgcaatgtgcaattg
acagtcaaaaagaccacaagatcgatgaagacgctggaaggcagtcttcttctgaggggc
caggctggaggaaaatcctcggaccgtcatgtcatttccaccagagtaatggagctggac
aagttggtcccagagaagcttggtgtttcaccagccgtgcttgaggccgtcattttctgc
caccaggatgagtccatgtggcctatgagcgaaccctcggctctgaagaagcggttcgat
gaaatcttcgaggccatgaaatacaccaaggtaatcgacaatctcaaagtgctccgcaag
agaaagggggaagagctgcgagaattgaaaattcaagagacgcaagacaaggtcaacaag
gagagagccgacaaggttggcaggctcataatacaaatgagccaggagattgaagaagcg
cagacaaaatgcagcgatatcctcaagcaaatgggagccaaggccaaggaaatcaaggac
aagcacgaacaggccaacagtttcttgaagattgtgaacgacctgcaaaacaagaccgag
aagctcgaatacaagagcgaagctatcagggaactacggagccgtatcgaagaactgccg
gatagtgatgatgtactgcggaacactctggctgagtatgcgcagacaatagagaggact
gtggccgacagagataggaagcaggcacagcaacaggagctccaagcggatctaaagcag
tctcgggacaagcatacggccaaagttgccgaacagggcaagcatcaatccgataaggac
aagtatgagcgccaactggccacaagagatcgaatggttcacgaggcggccgagcgccac
gagattcgcggctacgatggagacctggacggtgatctgatcaagtctttttacgaacgt
atccagaaggccctcaacgacaaaaagcgcgagctggagcggctccaaaagagcaatgct
gaagaactggacaagaagagctctgtcattgctgagcttgaaggccggaaacaatcactg
aaccgggatcgggcctcagcaaaacaacgcatcatggccattgggagggagtcggccacc
gttcaaggcgaacttggttctctcgacgtggacgagggctctgaggctgctcttcgtgca
gaaatgaaagaagtcgaggcaaggattgaggcagcaaaggccgacgaacaatctgcggac
ctcgacggccagatcaaaaaggtccaggatgagatctggcaactggaaacccaagctgcc
aagctcgggcgggaactggttgaatgcaccagactggcgtctgagcgtgcacagcttgat
ctgcgcaagaagcagctgactgaccgacggcgcgatcttgatattctcaagaatacctgg
tctgagcagctgtcggcgcttctgggcgcaaactggacaccggacactgtcgaagctgaa
tttcagagcgccttgagaaagcaggacggtgttgttgccgaagccagaaaacagaaagac
gccacgcagcaagaactcaagcaggtcgagtacaagctatccaccactcgggaccggcac
accaaacttttaacagagatgaagagctgccaacatgacgttttgaaagcactacgtgcc
accagggacgagaacgaccctgagcacccccctctggacaactacgaggcgcagacaaag
cacgtagagacggagcttgcccagatcgagtccgatctcaagttgactgaagagatgaag
acctactacaccaaggtcaagacaattgccgaaaagcacaacaagtgcaacctttgcgac
cgagatttccacaaccaggaagacgtaaagaggagggtcttcaacaagattgccaaggca
cttggcgatgaagtgaagcaggagttggaggtggacaaggcagatttcgctgctcgtttg
aggcagttgaaagctgtgcgtgcccagtatgatacctatggacgtctcgaaaaggaggtg
cctaccctgtccgcggagctcaatgtctgcacaacccaaaaggaagacctggtgcggcgg
ctggaggacaaggacctcgcctttggcaaggcggaagagcaacgacgggagatggactct
ctcagcaagaatgttttgaagatttctcaaaatcacaaagacatccaggaagccgagagg
caggtcgagcggtcgcagcaatcttcaagcgtgaccactcgcagtcccgacgaaatcaac
gaggagcagaccacctgtgcggagcagactcgtgtcgcccagaccagactcaacaagctc
actgtcgagagacagcgactcaaggatttggcttcgcagctcgaggtggagaggcttgag
ttgagacacaagatagccactgcggcccagcaacttgagcggaagaagagtcttcaagac
caaattcggcggttcaaggaggaacaagcacagctccgcgagtcggttcagactgctgac
aatgatctggaagccctcgagcccgagatggccaccgcacgctctgcccttgacgaagtg
cggcaacacggtcgggccaaggagcaaaaggtcacagagaagcgcgatgctatcgggggc
actgtcagtgagctcaggatgattaacggtgaaatccaagagtatctcgagcgtggcggc
ccctcgaatctagcttccaaccagcgcgctattaccacgctggaggcaactattgccagc
attgaggctgagatgaaggatttgaccgtgcagatcaacaagctgaataaggagattgac
aacagcgacgccaagaagagaaatatctccgacaatctcacctaccgcaagaacctccgc
gagcgtgtcgctcttcaacaggagattgaggagctcaaatcccgcaaagccgaggaagac
taccagcgtctcagcctcgaggcgcgcatcctcgaagatcaacgaggcctgttgacggcg
gagcgggaacggttgatgggcaacgtggcgtcgaaggacgaccagctgagccggctgcaa
gaagaatacgatctcgacctcaagggcgccaaggccaagtacaaggaatcgcacatcaag
gttgagacgaccaaggcggctattgacgaccttggccggggcaccatggctctcgaccat
gccattatgcaattccactctctcaaaatggaggagatcaaccgcatcatcggcgagctc
tggagggagacgtaccaaggcacagacattgacacgatccagatccggtccgacgtagag
tcgggtgccggttcgggaggcggcggcaagcgcaactacaactatcgggtttcgatggtc
aagggcgacacggagatggacatgcgcgggcggtgctcggcaggccaaaaggtgctggct
agcatcatcatccggctggcgctggccgagtcgtttggcgtcaactgcggcctgatcgcg
ctggacgagccgacgaccaatctcgacagcgacaacatccgcagcctggcgagcagcctg
cacaggatcatcaaggcgaggcagtcgcaggggaacctgcagctgattgtgatcacccac
gatgaggagtttttgaagcacatgcggtgccaggacttttgcgacacgttttaccgggtg
gagcgcaacgcgaggcagaacagtgttattcgggtggaaaacatcacgaggatctccgag
taa
DBGET
integrated database retrieval system
