Podospora pseudopauciseta: QC763_117770
Help
Entry
QC763_117770 CDS
T09815
Symbol
prp10
Name
(RefSeq) U2 snRNP component prp10
KO
K12828
splicing factor 3B subunit 1
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC763_117770 (prp10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppsp03041
]
QC763_117770 (prp10)
03036 Chromosome and associated proteins [BR:
ppsp03036
]
QC763_117770 (prp10)
Spliceosome [BR:
ppsp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
QC763_117770 (prp10)
Complex B
QC763_117770 (prp10)
Complex C
U2 SnRNP specific factors
QC763_117770 (prp10)
Chromosome and associated proteins [BR:
ppsp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
QC763_117770 (prp10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
HEAT_EZ
TOR1L1_N
HEAT_EF3_N
HEAT_2
Htt_N-HEAT_1
UTP20
mTOR_dom
XMAP215_CLASP_TOG
RRP12_HEAT
Adaptin_N
Opi1
UNC45-central
Motif
Other DBs
NCBI-GeneID:
87928712
NCBI-ProteinID:
XP_062771456
LinkDB
All DBs
Position
1:complement(6495222..6499118)
Genome browser
AA seq
1203 aa
AA seq
DB search
MSDAEFDQIRKLQAERNAAAAAKKALMRPGIPTSTIEVPTAPTSYHTSLPAQDGDDDEDM
ADADSSRRLVGQYTATRAQIDEFARGNGVEEDDILAGRGEKSNRITDRETDYQKRRFDRV
LTPTRADPFAANRQAAAAEDGMSYREIMESREIEREEERVRRAIEQKMKDGATEEHKPTL
QIEEAGNKENGDAGSTEAAAAGRKRKKRWDVATTDAEAAPAAAEPKKRSRWDQAPSVPVL
GADGTVVEAKKKSRWDQAPSATPVGNIGLATPMHPTQTAVLPPTAFGPDAGRYMPLSDEE
LDAMLPGPDDGYKILEPPPGYAPTRAPTHKLAVPPTPQTGFMMQDPESTRLSGQAVPREI
PGVGDLQFFKPEDMAYFGKLTDGSNEDDLTVEELKERKIMRLLLKVKNGTPPMRKTALRQ
LTDNARNFGAGPLFNQILPLLMEKTLEDQERHLLVKVIDRILYKLDDMVRPYVHKILVVI
EPLLIDQDYYARVEGREIISNLSKAAGLATMISVMRPDIDHVDEYVRNTTARAFAVVASA
LGIPALLPFLGAVCRSKKSWQARHTGVKIVQQIPILMGCAVLPHLKQLVDCIGPNLNDEQ
TKVRTVTSLAIAALAEASNPYGIESFDDILNPLWTGARKQRGKGLAGFLKAVGYIIPLMD
EDYANYYTSQIMEILLREFASPDEEMKKVVLKVISQCAATDGVTAGYLKEHVLDDFFKSF
WVRRMALDKRNYRQVVETTVDIGQKVGVSEILERIVVNLKDESEAYRKMTVETVEKIVAS
LGAADIGERLEERLVDGILHAFQEQSVEDIIMLNGFGSVVNALGTRCKPYLPQIVSTILW
RLNNKSATVRQQAADLVSRIAMVMKQCGEDALMGKLGVVLYEYLGEEYPEVLGSILGALR
SIVTVVGISQMQPPIKDLLPRLTPILRNRHEKVQENTIDLVGRIADRGPESVNAREWMRI
CFELLDMLKAHKKGIRRAANNTFGFIAKAIGPQDVLATLLNNLRVQERQSRVNTAVAIGI
VAETCAPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMAKDYVYAVTPLLEDALI
DRDQVHRQTAASVVKHIALGVVGLGCEDAMVHLLNLLYPNLFETSPHVIDRIVEAIEAVR
MAVGPGLVLNYVWAGLFHPARKVRTPYWRLYNDAYVQAADAMVPYYPNLAEEGVDRGELA
IVL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgcggaatttgatcagattcgcaagctccaggccgagcgaaacgcggctgcc
gctgcgaaaaaagccttaatgaggcctgggataccgacctctacgatcgaagtgccaacg
gcgccgacaagctatcacacctccctccccgctcaagatggtgatgacgatgaggacatg
gccgacgccgatagctcgcgccgcctcgtcggacagtacactgctacccgtgcccagata
gatgagtttgcgcgtggaaatggagtggaagaagacgacattctcgctggtcgtggcgag
aagagcaaccgcatcacagatcgcgaaaccgattaccagaagcgtcgatttgatcgcgtt
ctgacccctacccgcgccgaccccttcgccgccaatcgccaggctgccgctgctgaggat
ggaatgagctatcgcgagattatggagagtcgcgagattgagcgtgaggaggagcgcgtg
cgccgagctatcgaacagaagatgaaagacggtgccactgaagaacataagcctacactc
cagattgaggaggccggaaacaaggagaacggtgatgccggttcgaccgaggcagcagcc
gctggccgcaagcgcaaaaagagatgggatgttgctactacagacgccgaggctgcccca
gcagccgcagagcccaagaagcgctcgcgctgggatcaggcaccttctgtgcccgttctt
ggcgctgatggaactgtagtagaagcaaagaagaagtcaagatgggatcaagcgccgtct
gccacccccgttggaaacattggtctcgccactccgatgcaccctacacaaactgctgtt
ctgccccccactgcgttcggccccgatgccggccggtacatgccactcagcgatgaggag
ctcgacgctatgcttcctggtcctgacgatggatacaagattctcgagcctcccccggga
tatgcccctacccgggcgcccacgcacaagctggcagtgccaccaacaccacagacaggc
ttcatgatgcaggatcctgagagcacacgtctctctgggcaagcagttccaagggaaatc
cccggtgttggtgatcttcagtttttcaagcctgaggacatggcgtactttggcaagctc
acagacgggtccaatgaagacgatctgactgtcgaagagctgaaggagaggaagatcatg
cgcctgttgttgaaggtgaagaacggtactcccccgatgaggaagactgcactcaggcag
cttacagataatgctcgaaacttcggtgccggacccctcttcaaccagattctcccgcta
ctcatggagaagacccttgaggaccaggaacgccatcttcttgtcaaggttattgaccgt
atcctttacaagctggatgatatggttcggccctatgtccacaagatcttggtggtcatt
gagccattgctcattgaccaggactattatgcacgagtcgaaggtcgcgagattatttct
aacctcagcaaagccgctggtctcgcgaccatgatcagtgtcatgcggcccgatatcgat
cacgtagatgaatacgtacgaaacacaactgccagagcgtttgctgtggtggcctcggcc
ttgggtattccggccctgctgccattcctgggagccgtgtgccgcagcaagaagtcgtgg
caggcgcgccataccggtgtgaagattgtccagcagattcccatcttgatgggctgtgca
gtgttgccacacctgaagcagctcgtagactgcattggccccaacctcaacgatgagcag
accaaggtacggacagtcaccagtttggccattgctgctcttgccgaagcctccaaccca
tatggtattgagagcttcgatgatatcctcaatcccctgtggacgggagctcgcaagcaa
cgaggcaagggcctggcggggttcctcaaggccgtcggctacatcatccccctcatggac
gaggactacgcaaactactacacaagtcagattatggagattctcttgcgagagtttgcc
tcgccagatgaggagatgaagaaggtcgtgctcaaggtcatctctcagtgcgccgcaacg
gatggtgtcacagctggttatctcaaggaacatgtgttggacgacttctttaagagcttc
tgggtacggcgtatggctttggataagcgcaactaccgtcaagtggttgagaccacggtc
gatatcggccaaaaggtcggtgtcagtgagattctcgagagaatcgtggtcaacctcaag
gacgaaagcgaagcctaccggaaaatgactgttgagacagtggaaaagatagtagcctct
ctgggtgcggcagacattggcgagcggttggaagagagacttgtcgatggtatcctgcac
gccttccaagagcaaagcgttgaagacatcatcatgctcaacggttttggctccgtggtc
aatgctctgggcactcgctgcaagccatacctcccccagatcgtcagcacaattctctgg
cgtctcaacaacaagtctgccacagttcgccagcaagctgctgatcttgtttccagaatt
gccatggtgatgaagcaatgcggcgaagacgctttgatgggcaagctcggtgttgttctt
tacgaatacctcggtgaagaatatcctgaagttctcggctccatccttggtgctctgagg
tccattgtgactgtggtgggcatcagccaaatgcagccacccatcaaggacctcttgcca
cgcctcacacccatcctgcgcaaccgacatgagaaagtccaggaaaacactattgacctg
gtcggccgtatcgccgaccgcggaccggaaagtgtcaacgctcgcgagtggatgagaatc
tgctttgagctgttggatatgctcaaagcccacaaaaaaggcatccgtcgcgcggcaaac
aacacgttcggcttcatcgccaaagccatcggcccccaggatgtgttggccacccttctt
aacaacctcagagtgcaggagcgtcagtcacgtgtcaataccgccgttgccattggtatc
gttgccgagacttgcgctcctttcactgtcctccccgccttgatgaacgagtaccgggtg
ccggaactcaacgttcagaacggtgttctcaagtcgctctctttcctctttgagtatatc
ggcgaaatggccaaggactatgtctacgctgttacacccctcttggaggatgccctcatc
gaccgtgaccaagtccatcggcaaactgccgcttcagtcgtcaagcatattgcgctgggc
gtggtagggttggggtgtgaagatgccatggttcacttgctgaacttgctgtatccaaat
ctgtttgagacgagcccgcacgtcattgacaggattgtcgaagcgattgaagcggtgagg
atggcggtggggccggggttggtgctgaattatgtctgggctgggcttttccatccagcg
aggaaggtgaggacgccgtattggaggttgtataatgatgcgtatgtgcaggctgcggat
gcgatggtgccgtattatcctaatttggcggaggagggggttgataggggggagttggcg
attgttttgtaa
DBGET
integrated database retrieval system
