Podospora pseudopauciseta: QC763_117870
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Entry
QC763_117870 CDS
T09815
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03018
RNA degradation
ppsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC763_117870 (LSM2)
09123 Folding, sorting and degradation
03018 RNA degradation
QC763_117870 (LSM2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_117870 (LSM2)
03041 Spliceosome [BR:
ppsp03041
]
QC763_117870 (LSM2)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
QC763_117870 (LSM2)
mRNA degradation factors
5'-3' decay
Lsm complex
QC763_117870 (LSM2)
Spliceosome [BR:
ppsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
QC763_117870 (LSM2)
Complex C
U2 snRNP components
QC763_117870 (LSM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
AEP1
Motif
Other DBs
NCBI-GeneID:
87928720
NCBI-ProteinID:
XP_062771468
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All DBs
Position
1:6529228..6530266
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AA seq
98 aa
AA seq
DB search
MLFFSFFKTLIDHEVTVELKNDIRIRGVLKSVDQYLNIKLDNIQVVDELKYPHLSAVKNV
FIRGSVVRYVHLPSQSVDIDLLEDATRREAANQAVKAK
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcttcagcttcttcaaaaccctcatcgaccatgaggtgaccgtcgagctcaaa
aacgacatccgcatccgcggcgtcctcaagagtgtcgaccaatacctcaacatcaagctc
gacaacatccaggtggtggatgagctcaagtatcctcacttgagcgctgtcaagaatgtc
tttatcagaggctcggtcgtgagatatgtccatctgccttctcagtcggtggatattgac
ttgctggaggatgctacgaggagagaggcggcaaaccaagctgtgaaggcgaagtga
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