Podospora pseudopauciseta: QC763_123280
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Entry
QC763_123280 CDS
T09815
Symbol
RLR1
Name
(RefSeq) THO2 plays a role in transcriptional elongation
KO
K12879
THO complex subunit 2
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03013
Nucleocytoplasmic transport
ppsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC763_123280 (RLR1)
09122 Translation
03013 Nucleocytoplasmic transport
QC763_123280 (RLR1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_123280 (RLR1)
03041 Spliceosome [BR:
ppsp03041
]
QC763_123280 (RLR1)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
QC763_123280 (RLR1)
Spliceosome [BR:
ppsp03041
]
Complex C
Other components
EJC/TREX
QC763_123280 (RLR1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
QC763_123280 (RLR1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
87929235
NCBI-ProteinID:
XP_062772059
UniProt:
A0ABR0I3Q2
LinkDB
All DBs
Position
1:8526235..8535027
Genome browser
AA seq
2510 aa
AA seq
DB search
MMGPQRKRKDRVPPDSGSSRPSPHRPQDTSLGQHDRSFDGGNRNNRAGAGGGGGGNRNLR
RDNRRDSSQSHIAPPPSSSAPASISPTMARPSSASSQTPLPPLTTTVTPTPAPQSAPPSP
ILVDEDYTIVTDDCISRWSKGARQQIIEHGVQSREDEDLTEVASIFQELVWSVNTGRLRG
ADAGGVVREILGPEPSEEEREAGAFDPHTLFLDTVGSYSDTQTDSVREQFQDFMMASGVS
LSLMRVDLDPSVLAPLELVRDTFFRMSIRTSTNLLYRQASYNLLREETEGFSKLVTEIFT
TCSNEPASSEVVQDTFNKVMGLIGTFDLNPGRVLDITLDVFAAILVKQFRFFIKFLRFSS
WWPRSQLTLPTDTYVGGLPLWAHPDHESPFNSEEEDAMAAAQRLQRDIAFWERARQVKLD
AFFELGGRQLTAADEERLANGTAAKNAESEIEQEWIRITRTLPPCGNRDAAQMLGFKLRF
YTSDARDPEDTLPANLLYLTALLIKVGFISLTDIWNFIWPRDEEMEETRAEKMKELEEKE
RANRPGAAKNALMMAGALPDEGPSGQPINSSRRDAASNKADTEMKGADSPEDKPNLPKPQ
DQKLHLLHCLLIIGALPEALFMIGRHDWVLEADPETVTLLHRILRHSIDVVYNQSRPTAA
ASTDCPPKAMPDMDQSGVTKGSIRVSTAPPKRPLKWPHVDKNDHDGSNYRFYWDEWADNV
PVCQTVDDLFTLFDTLMNVVGVNIGLDADLMAKLSSIGTKSLADDQSPENVSRWLDILKR
LLVPALSLGETNTSVADSVWNLLKQYPISIRYNIYAEWYQGSISRLEPIRKAFAKTRLET
LSILKRLSLTNIPEMAKSLAKIAYPSPGIVCKVSLSQIESYSNFIEAFVECTKYFTDLGY
DVLVWSVLSSLGGQQRSRTQEDSVLLTSRWLQALSKFSGRVFQRYANVDSSPILRYVHNQ
LLQGNSTDLVILKELVVSMGGVVSDLDFTDAQLHAMTGGELLRRETLINLGDKRAASTRS
AERLMRALTSSKLAGQLLINIAQYRQNAIYAEEGGARIKYLATVVDDTHQILLQYLDLLK
SNLDAVTFNNLVPDILQLMRDFGLEANLAFLIRRSSIRWEVKGSANSTELAKVAADGDGD
VAMDAADENGAPGSDGAENGSPKTPENRVPESLAEALAPLIEEIPSVLPQQDWRYISPSF
YVFFWSLHLGNLLFPQESYQVENSRLIKQAEEVMRDRTDMTRHGMNKKTQKRNEILDRQK
LLLKEMNEGLTRFSKARVHLGRQVDSWFPAPITKADAASDALLEECILPRLHLSPLDAEY
CFRLVKFLHEFSTSNFKLMSLYDRLFNHNRLRAIIFTCTVREAEHVGRFLKLILGDLSKW
HGDKNAYEKEALGLKEVSKTRQYLGFATAFDADGKPTEFVEHDAFKDLLFKWHKELNTAL
RSCLNGMEWMHIRNAITVLKSVIDYFPAINFMADKFLEQLKTITEREAASKNASESEMGH
RVDLSVTAQTAYSELQKRKSKWILVQAFRPGAKGDSTPTPGLRGSAAEFKPAGSRAHQAE
VEDGEVTKDGAGKKKSDSRARDEKHILPKPPPPREPLRESNGPGQRVGPANGPSGKPNSS
RSNPTGPASSGGRPERHERHERPERPEPPKFSTLPPVGHGLPNKPDLPARPEPAFPRGAN
DRFGATRHDRREPPARDARDFSRDSRDSRDSRELREARDSRDAHPAHPPLPSHPSHARDA
RDPRDPHGPREARDFRAPEVPRSERPRDFSSDRRAADAGPRDPARASERDWSTRSELPPR
WNEHGAPADRDARGPRDRAPHASGRHDPRGPREPPVGQSPQTSSASNASQDPPTHPDRAR
AIADADRPDIINPARAALINDSRDAPPRSGHRDQLRDRPGRTESPRRTDHSAANAAQPDN
SRDERHGRHRHSDHHNTSREGRPDSLPSHPRQDRTQDHGSSHSRPDRNTDHTQLHGRQDR
NIENAPSQPRQDRNIDNAPSQPRSDRNAERDERTAGSRDASFGGPPRSDPDHGRLNQQDP
NYGRLQPIQSVVDMPTGAPPSGPRGRGGRNTNRMGPANGVSMRPDTRPSVPESVRPASPE
RQVPTGPAAGRQRQQQRGNQFEKTNSPTVPTAPAAGVHPDRMRHINNQQAPSAPSPPPGP
PTGPSGIHPDRLNQISGTPSGTASHSRPPINTPDRPSMSAPNTGSRQAPPPLNTDFATPT
GPAASNDRMRSGGRQLRNIQNMIDKTSMENNRGPGLRMSRSRPNLAGSDAQILAGSSPVT
TPVQERPEPFPRDSGRRDVNVDRAPAAPVPIQVVGDSRSNGDDYGSSRNEHDRSRREHRS
DRSNRPSRTSSRERNPDRDRDAKEPRDYNHRRSGVSSSGVPSAGRDDRDPNAPRRSGRES
LPGGGGRDMPPAGPREPTHRGSNRSDGNAGPRSDAVQSGRNDGHGGGGQDYGSGRTGPPR
GGIPQPRDSRGPHRQPSDQHGDGRNGGNDRKRRSEGLDSGNHQDKRPRRS
NT seq
7533 nt
NT seq
+upstream
nt +downstream
nt
atgatgggcccgcagaggaagagaaaagatcgggtcccaccagactcggggtcatctaga
ccttccccgcatcgtcctcaggatacctcactagggcagcacgaccgaagctttgatggg
ggcaaccgcaacaatcgggcaggagcaggtggcggcggtggtgggaacagaaacctccgg
agagataatcgtcgcgactcctctcaatctcatattgcgcctcctccatcatcaagcgcc
ccggcttcaatatctccaaccatggctcgaccatcgagtgcctcttcgcaaacccctctg
cctcctttgacgacaaccgtcaccccaacaccagcaccccagtcagcacccccatctccc
attctggttgatgaggattataccatcgtcaccgacgactgcattagcagatggagcaag
ggcgcccgccaacagatcatcgagcatggtgtccaatctcgcgaggacgaggatcttacc
gaggtcgcttccatcttccaggagcttgtctggtcagtcaacactggcaggctacgcggc
gccgacgctggcggtgtcgtgagggaaatcctggggcctgagccgtcggaggaggagcgc
gaagctggggctttcgacccgcatactttgttcttggacacagttggcagttattccgac
acccagacggactccgtacgagagcagtttcaggatttcatgatggctagcggggtctct
ctgtcccttatgcgcgtcgatcttgacccttcagttctggcgcctctcgagctggttcgc
gacaccttttttagaatgagtatccgcacctccaccaatttgctctaccgccaggcaagt
tacaacctgttgcgtgaggaaaccgagggcttctccaagctagtgacggaaatcttcacc
acgtgttccaacgagccagcctcttcggaggttgtacaggatacttttaacaaggttatg
ggccttattgggaccttcgatctgaatcccggccgagttctcgacattacattagatgtg
tttgccgccattctcgtcaagcagttccgtttcttcatcaagtttcttcgcttcagctcg
tggtggccgcgaagccaactcacattgccaactgatacctacgttggcgggcttccatta
tgggcccacccagatcacgagagtccattcaatagtgaggaggaggatgcgatggcggcg
gcccagcgtttgcaacgagatatcgccttctgggagagggcccgccaagtcaaactcgac
gccttctttgaactgggtggtagacagcttactgctgccgacgaagaacgactggcgaac
ggcactgctgcaaagaacgcagaatccgagattgagcaggagtggattaggatcaccaga
acacttccgccttgcggtaaccgcgacgccgctcagatgcttggcttcaagttgcgcttt
tacacgtcggatgccagagacccagaagatacccttcccgccaacctattgtacctcaca
gcactcttgatcaaagtgggtttcatatccttgacagatatctggaactttatctggccc
cgcgacgaggagatggaggaaactagagccgaaaaaatgaaggagctggaggagaaagaa
agggctaatcgccctggcgccgccaagaatgctctaatgatggctggtgctctaccggac
gagggcccctccggccagcccattaactcttcccgccgcgatgccgcttcaaacaaggcc
gatacggaaatgaagggtgcggactctccggaagacaagccgaatctccccaagcctcag
gaccaaaagcttcatcttctccactgtcttcttatcatcggtgctcttccagaggcgctt
tttatgattggacgacacgactgggttcttgaggccgatccggaaaccgtgaccttgctt
caccgaatccttagacactctatcgatgttgtctacaaccagagccgcccgacggcagcg
gcgtcaaccgactgcccccccaaagcaatgcctgacatggatcagagtggtgtgaccaaa
ggcagtatcagggtcagcacggcacctcctaagcgtcctttgaaatggcctcacgtcgac
aagaatgatcacgacggctccaactaccggttctattgggacgagtgggctgataacgtc
cctgtttgtcagacagttgacgacctgtttaccctcttcgataccctgatgaatgtggtg
ggcgtcaacatcggcctggatgctgatctgatggccaaacttagcagcatcggcaccaag
agtcttgcagatgatcaatcgccagaaaatgtcagccggtggcttgatattctcaaacgt
ctcttggtgccagcgctgagcctgggggaaaccaacacttcggtggctgacagtgtgtgg
aaccttctcaagcaatatcccatcagcattcggtacaacatctatgccgagtggtaccaa
gggtctatttctcgactagaacccattcgaaaggcttttgcaaagaccagattggagaca
ctcagcattctcaagcggttgtcgctcaccaacattccggaaatggccaagagtctggcc
aagattgcttatccatccccaggaatcgtctgcaaagtctcactctcccaaatcgaatcc
tacagcaacttcatcgaggcttttgtcgaatgcaccaagtactttacggatcttggatat
gacgtcttggtctggtcggtcctgagctctctcggtggccaacagagaagtcgtactcaa
gaggactcagttctgctcacgagcagatggttacaagcgctgtccaagttttccggcaga
gtctttcaacgctatgccaatgttgactcgtccccaatccttcgatatgttcacaaccaa
ctcctccaaggaaactcgactgatctcgtcattttgaaggagctggttgtgtcaatgggc
ggtgtcgtgtccgaccttgacttcacggatgcccagttgcacgctatgacgggtggcgag
ttacttcggcgtgagactctgatcaatctcggcgacaagcgggcggcgtctactcgcagc
gctgagcgtctcatgagggcgttgacgagctccaagctagcaggccaacttctcatcaac
atcgctcagtaccggcagaacgccatctatgctgaggaaggcggtgcacgtatcaaatac
ttggccacagtcgttgacgacacccatcagattctcctccagtatctcgatctactgaag
agcaacctagatgccgtcaccttcaacaatctcgtccctgacatccttcagctcatgcgg
gactttggcttggaggccaaccttgcctttttaattcggcggtccagcattcgctgggaa
gtgaagggctccgccaactcaaccgagctcgccaaggtcgctgcggacggggatggtgat
gttgcaatggatgcggctgatgagaacggggcccctggctcagatggcgctgagaatggc
tcacccaaaacccccgagaaccgtgtgccagagtctttagctgaggccctcgcgccactc
atcgaagagatacccagtgtgctcccacaacaggattggcgatacatcagcccatcgttc
tacgtcttcttttggtcactccacctaggcaacctactcttcccccaggaaagttaccaa
gtggagaatagcagactcatcaagcaagcagaagaagtcatgagggacagaacggacatg
actcggcacgggatgaacaagaagacccagaaacggaacgagatcttggatcgccaaaaa
cttctcttgaaggagatgaacgaaggcctcacccgtttctccaaagctagagtacacctc
ggcagacaagtcgacagctggtttccagcgcccatcaccaaggctgatgcagcatcggac
gcgcttctcgaggagtgcatcttaccccgtttgcacctctcaccgttggatgccgaatac
tgcttcagactggtcaagtttttgcacgagttctctacttcaaacttcaagctcatgtca
ctctacgatcgactcttcaaccacaaccgtctccgggccatcatcttcacctgcaccgtc
cgcgaagctgaacatgttggccgattcttgaagctcatccttggcgacctgtccaagtgg
catggtgataagaatgcttacgaaaaggaggccctgggcctgaaggaggttagcaaaact
cgccagtaccttggttttgcaaccgctttcgacgcggatggaaagccaaccgagtttgtc
gagcatgatgccttcaaagatctgctgttcaaatggcacaaggaactgaacaccgccttg
agatcttgcctgaatggcatggaatggatgcatattcgcaatgccatcaccgttctcaag
tccgtcattgattactttcccgccatcaacttcatggccgacaaatttctggagcagctc
aagaccatcactgaacgtgaagctgcttccaagaatgcatccgaatccgaaatgggccac
cgtgtcgatctttctgtcaccgcgcagactgcctactccgaactacagaagagaaagtcg
aaatggatccttgttcaggcattcaggccaggcgctaagggcgattcgacaccaacgcct
gggctccgtggctccgcagcagaattcaagccagccggctctcgcgcgcaccaagccgaa
gttgaagacggcgaagttaccaaggacggagcaggcaagaagaagagtgattcaagggca
agggatgaaaagcacatcctgccgaaacccccacccccgcgggaacctctgcgagagtct
aatggacctggtcagagggtgggcccagccaacggcccatctggaaagccgaacagttct
cgatcgaacccaaccgggccagcatcttctggtggccgccctgaacggcatgagcgacat
gagcgtccggagcggccggaaccacccaagttctctaccctcccaccagttggtcatggc
ctaccaaacaaaccagatcttccggctaggcccgagcctgctttcccaagaggcgccaac
gataggtttggagcgacgcgtcacgataggcgtgagcctccagctcgcgacgcccgtgat
ttcagcagggacagtcgcgactctcgtgattctcgggagctgagagaagccagggattca
cgggatgcccatccagcacacccaccccttccttctcacccatcgcacgcacgtgatgcc
cgtgatcctcgcgatccccacggtcctcgtgaggctagagatttccgcgctccagaagtt
ccacggtcagagcggcctcgcgacttttcgtctgatcgacgagccgctgatgctggtccg
cgggaccctgctcgcgcttcagagagggattggtcaacccgcagtgaactgccacctcga
tggaatgagcacggtgcgcccgctgacagagacgcccgtggtcctcgtgaccgggcacca
catgcttccggtcgacatgatccaagaggacctagagaaccaccagtgggacaatctcct
cagaccagttcggcatcgaatgcgtcccaagatccgcccactcatccagatcgtgctcgt
gctattgcggatgccgatcggcccgacatcatcaacccagcgagagccgcgctcatcaac
gacagcagagatgcgcctcctcgttcgggtcatagagatcagctccgcgatcggcctggt
cggactgaatcgccgagacgaacagatcactccgcggcgaatgcagcacagccggacaac
tcgcgggatgagcgacatgggcgtcaccgtcactcggatcatcataatacaagccgggaa
ggtcgtccagacagcttaccatcgcatccccgtcaggatcgcactcaagatcatggctcc
tcacactctcgtccggatcgcaacacagatcacactcagcttcatggacgccaggatcgc
aacattgaaaatgccccgtcccagcctcgccaggatcggaatatcgacaatgcgccatca
cagccccgctcggaccgcaatgctgagcgcgatgagagaacggcggggtctagggatgct
tcatttggtggcccgccgcgctcggatccggaccatggtagattgaaccagcaggatccc
aactacggccggctccaacccatccagtcggtggttgacatgcctaccggagctcccccg
tccggacccagaggtagaggtggtaggaacacaaacagaatgggtcctgccaacggggtg
tctatgcgtcccgatactaggccttctgtgccagagtcagttcgccccgcgtcgcctgag
cgtcaagtgcctactgggcccgcggcaggccggcagcggcagcaacagcgcggtaaccag
tttgagaaaaccaactctcccactgttcctacagcgcctgcggcaggtgttcatccagat
agaatgcggcatatcaacaatcagcaagcgcccagcgcaccctccccgcctcctggacca
cccactggcccgtctggtatccacccagatcgtctgaaccagatctcgggtactccttcc
ggcaccgcatctcactcaaggccaccgatcaacacacctgatcggccatccatgtcggca
ccgaacacggggtcaaggcaggcacctccacccctgaacacggactttgccacgcctacc
ggcccagcagcgtctaacgaccgcatgaggtccggtgggagacagcttaggaacatccaa
aacatgattgacaagacgtctatggagaacaaccgcggtcctggactgcggatgagtcgc
tctcgtcctaacttggcgggttcagacgcgcagattctcgctggttcttctcctgtcacg
actcctgttcaggaacgccccgagccattcccgcgggattctgggcgccgtgatgtgaat
gtcgaccgtgctccagcggcacctgttcctattcaggtggtaggagacagccggtcgaat
ggagacgactatggatcaagccgtaacgagcacgacagaagtcgccgggaacataggagt
gatcgcagcaaccggccatctaggactagcagtcgagagcgcaacccggaccgtgaccgc
gacgccaaggagccacgggactacaaccacaggcgatcaggcgtttcttcatccggcgtc
ccgagtgctggccgtgatgatagggatccgaatgctcctcgccgctccggccgtgaatct
cttccgggtggtgggggaagggacatgccgccagctggaccgcgcgagcctactcatcgt
ggcagcaatcgcagtgatggcaatgctggtccacggagcgatgcggtacagtctggaagg
aatgatgggcatggtggtggtggccaggactacggctccggtcggacaggccctccacgc
gggggcatcccgcagcccagggactcaagagggcctcacagacagcccagcgaccagcat
ggtgatggacggaatggggggaatgataggaagcggaggagcgaagggttggactctggg
aatcatcaggacaagcggccacgtcggagttag
DBGET
integrated database retrieval system
