Podospora pseudopauciseta: QC763_305840
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Entry
QC763_305840 CDS
T09815
Symbol
MTR4
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC763_305840 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_305840 (MTR4)
03041 Spliceosome [BR:
ppsp03041
]
QC763_305840 (MTR4)
03009 Ribosome biogenesis [BR:
ppsp03009
]
QC763_305840 (MTR4)
03016 Transfer RNA biogenesis [BR:
ppsp03016
]
QC763_305840 (MTR4)
Enzymes [BR:
ppsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QC763_305840 (MTR4)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
QC763_305840 (MTR4)
Spliceosome [BR:
ppsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
QC763_305840 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
QC763_305840 (MTR4)
Ribosome biogenesis [BR:
ppsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
QC763_305840 (MTR4)
Transfer RNA biogenesis [BR:
ppsp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
QC763_305840 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
BRICHOS
AAA_16
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
87931372
NCBI-ProteinID:
XP_062767029
LinkDB
All DBs
Position
3:complement(2053141..2056879)
Genome browser
AA seq
1082 aa
AA seq
DB search
MDDLFDVFEQQPRAPKKRKAPADQSQDVEMTDGTDHAASQADQSIKTEDASPAEEHHPQE
ISHGDMKRQKLEGEPEPAAPVMADSFQTAQSREVNAAAGFAPGKEGESIVLSHNIQHQVA
LPPDLDYEYIPLSEHKAPEEPARVYPFKLDPFQALSVASIERGESVLVSAHTSAGKTVVA
EYAIAQCLKRNQRVIYTSPIKALSNQKYRDFQAEFGDVGLMTGDVTINPTASCLVMTTEI
LRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQ
FAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGKGIFLIVDEKGNFKENNFQHAMNLIE
ANKGSDPADWSAKRKGKGKDKKTNKGGDAPNETADIAKIIRMIVKKKFQPVIVFNFSKRD
CEQMALKSSHMKFNAPDEELMVDKVFENALQQLSDEDKNLAQITNILPLLRKGIGVHHSG
LLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVARRPLTSSEYI
QMAGRAGRRGLDDRGIVIMMVDDKLDPDTAKSVVVGHQDRLNSAFHLGYNMILNLLRIEA
ISPEFMLERCFFQFQNAASVPQLEKELTALQEEKDAMLLPDESTVKDYYHLREQLKELTK
DMTSVIHHPANCMEFMQPGRVIQIETPDGVNFGWGVLFDTVARKAPKHGESDYPPQEQYF
CDVLLKLSKQSKSFNPAVRETSKKGGKFIMPEGQIPEQADEEADWEVVPCLLSCVKSLSQ
LRVFLPKDVRSREEKENVGKSLLEIQRRFADGIPIMDPIENMNIRDDSFRKLLRKIEVLE
SRLLANPLHNSPLLPRLYEEFEAKTKLTEQIKEKRKAIGKAHTIAQLDELKSRKRVLRRL
GFIDEKEVVQMKARVACEISSTEGHELLLAELLFNRFFNELTPEVTAAILSVFIFDEKVE
TDALKEELAKPFREVQAQAKIIAKVSAESKLDVNEEEYVNSLKWQLMETVMAWANGRPFA
EISKMTNAYEGSLIRLFRRLEELLRQMAEAAKVMGSDELKEKFEAALGKIRRDIVSFNSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctattcgacgtcttcgagcagcagcctcgcgctcccaagaagcgcaaggcc
ccagccgaccagagtcaagatgttgaaatgaccgatggcaccgaccatgccgcttcccag
gctgatcagtccatcaaaaccgaggatgcatcgcccgccgaagaacaccacccgcaagag
atttcgcacggcgatatgaagcgccagaagctcgagggtgagccagaacctgccgcgcct
gtcatggccgattccttccagacggcccagtcaagagaagtcaatgccgctgcaggcttc
gctcctggcaaagagggagagtctatcgtcctgtcgcataatatccagcatcaggtcgcg
ctcccccctgacctcgactacgagtacatccctctttccgagcacaaggctcccgaagag
cctgcccgagtgtaccccttcaagctcgatcccttccaggccctgtccgtcgcctcgatc
gagcgcggcgagagtgtgctcgtttcggctcacacatctgccggcaagacggtcgtcgcc
gaatatgccattgcgcagtgtctcaagcgcaatcagagagtcatttacacgagtcccatc
aaggccctcagtaaccaaaagtaccgcgacttccaggccgagtttggtgatgttggtctc
atgaccggagatgtcaccatcaacccaaccgccagttgcttggtcatgacaaccgaaatt
ttgcgatccatgctgtaccgaggttccgaaatcatgcgcgaagttgcctgggtcgtcttc
gatgaaatccattacatgcgcgacaagactcgtggtgtggtctgggaagagaccatcatc
ctccttcccgacaaggtccgatacgtcttcctgtccgccaccattcccaacgccttccag
ttcgccgaatggatcgccaaaatccatcgtcaagcctgccacgttgtctataccgatttc
agaccgacaccattacaaaactacttcttccccgccggtggcaagggtatcttcctgatc
gttgacgaaaagggcaacttcaaggagaacaacttccagcatgccatgaacttgatcgag
gccaacaagggctccgatcctgccgactggagcgccaagaggaaaggaaagggcaaagac
aagaaaaccaacaagggtggcgatgccccgaacgaaacagccgacatcgccaaaattatc
agaatgattgtcaaaaagaagtttcagccagttattgttttcaatttcagcaagcgggat
tgcgagcagatggctctcaagagttcccacatgaagttcaacgcgcccgacgaggagctc
atggtcgacaaggtctttgaaaacgcccttcagcagctgtcggacgaagacaaaaacctc
gctcaaattaccaacattcttccccttctccgcaagggaataggtgtccatcactccggt
ctcctgcctatcctcaaggagaccatcgagattttgttccaggagggtttgatcaaggtg
ttgttcgccacagaaacattctctatcggcctgaacatgcctgccaggaccgtcgttttc
acacaagtcacgaagtgggacggtgtagccaggagaccgctcacctcctccgagtacatt
cagatggctggcagagccggtcgtcgtggtctcgatgaccgcggtatcgtcattatgatg
gttgacgacaagctagatcctgatactgccaagtccgtcgttgtcggccaccaggaccgc
ctcaactcggcgttccatcttggctacaacatgatcctcaacctgttgcgtatcgaggcc
atctcccctgaatttatgctcgagaggtgtttcttccagttccagaacgccgctagcgtg
ccccagttggaaaaggaactcactgctctgcaagaggagaaggatgccatgttgctcccc
gatgagagcacggtgaaggactactatcatctccgcgagcagcttaaggagctgaccaag
gacatgacttccgtcattcaccatcctgccaactgcatggagttcatgcagcccggtcgc
gtcatccagattgagactccagacggcgttaatttcggctggggagtcttgttcgacact
gtggctcgcaaggcccccaagcatggcgaatctgactacccgccacaggagcagtacttc
tgtgatgttcttctcaagctctccaagcagagcaaatccttcaatcctgcagtcagggaa
actagcaagaagggcggtaagtttatcatgccggaaggtcagattccagaacaagcagac
gaagaggcggattgggaagttgtgccttgcctcctgtcctgcgtcaagtctctgagccag
ctccgtgtcttcctccccaaggatgttaggtcacgagaggagaaggaaaacgtcggcaag
tctctgctggaaattcagcgccgttttgcggatgggatccccatcatggacccgatcgag
aacatgaacatcagggatgacagctttaggaagcttctcagaaagatcgaggtcttggag
tcgaggttgcttgccaatccccttcacaactcgccgttattgccccggttgtacgaggag
tttgaggccaagaccaagttgacggagcagatcaaggagaagaggaaggcgattggtaag
gctcacacgattgctcagcttgacgagctcaagtcacggaagagggtgctgcggaggttg
ggatttatcgatgagaaggaggttgtgcagatgaaggcgagggtggcgtgcgagatttcg
tctacggaggggcatgagttgctgctggcggagttgcttttcaatcggttcttcaacgag
ctcaccccagaggttacggccgccatcctcagcgtgttcatctttgacgaaaaggttgag
acggacgcgctgaaggaggagttggcgaagccgtttagggaggtgcaggctcaggcgaag
attattgccaaggtcagcgccgagagcaagttggatgtgaatgaggaggagtatgtcaat
agcttgaagtggcagttgatggagacggtgatggcttgggcgaatgggaggccgtttgct
gagatcagcaaaatgactaatgcttatgaaggctccctgatccggctgtttagacggttg
gaggagctgcttaggcagatggctgaggcggccaaggtgatggggagtgatgagctcaag
gaaaagttcgaggcggcgttgggcaagattaggagggatattgtttcttttaactctctt
tatctctag
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integrated database retrieval system
