Podospora pseudopauciseta: QC763_508830
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Entry
QC763_508830 CDS
T09815
Symbol
SKI3
Name
(RefSeq) Superkiller protein 3
KO
K12600
superkiller protein 3
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC763_508830 (SKI3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_508830 (SKI3)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
QC763_508830 (SKI3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_16
TPR_22
TPR_1
TPR_CcmH_CycH
TPR_8
TPR_14
TPR_17
TPR_12
TPR_11
TPR_6
TPR_7
TPR_9
ARM_TT21_C
ARM_TT21_5th
ARM_TT21_N
T7SS_EccA1_N
PPTA
TPR_Slam
ARM_TT21
TPR-S
RPN6_N
DUF5799
Motif
Other DBs
NCBI-GeneID:
87933817
NCBI-ProteinID:
XP_062764886
LinkDB
All DBs
Position
5
Genome browser
AA seq
1426 aa
AA seq
DB search
MSSTKAMLKSVNDFIKQSKWDDAREAANEVLQRDPKNYHAHIFLAFALDKKNMLEDAENT
YLAATNIKPGDTQAWQGLIRLYQKQGNKKLKQYKHAAIKLGEIFRDTNEMFKFQDVVDKF
VDHARTQGERLQYVDALDIQLPGSPLYEALEGRVPHPAKTYEIQAKIVEPEEKKRINTLI
GERRTRIGARVSEVTLEVKREVYRQSKLGHIYRQLIDWTADDELRRTCEEKLLQYCYDRL
LAWPPGEEKQQEMEVVRKLANDMVIIRHPFKFAWDIALNWQDHKEIKEWDVTILRQYCSF
FPDSDLNRVIMGFLTSDISPFPKETPAQNDVTVDGEPEDESEDDDAGGVPTTYVPLTEED
RLLMMTEGISSGDSLFAYRLMGEYYQHLEEYESNVELMRKAIDLLKTERTKTGLAFRNTG
DAYSLYLGTALVFYQSPRHHQEAKSLFDGVLAHDPTSTPAMIGVGLIYEEEEEYDEAVGF
LERALLGDPTNLRVKTEAAWVKALKGDFAAAKAELEACMPLLTEKGQNNKELLSQTKYRL
GYCIWNLDTSRSARKSRSGAYSHFLESLKSNLNYAPAYTILGIYYADYAKDKKRARRCFQ
KAVELSPSEVLSAERLARSFADDGDWDRVELVAQRVVDSGKVKPPPGSKRKGISWPFSAL
GVAELNKQDYHKAIVSFQAALRISPNDYHSWVGLGESYHGSGRYIAATKALLNAQKLEES
PDVEITGQETWFTRFILAEVKRELGDFDDAIDLYKQVLEDRPGEDGVAISLMQAMVDNAL
VSLDKGFFGKSIDHAVSALRFAVETPAAIKGTFNFWRAIADACSLFTSVQGRLSEFPREL
VQGLLGSDEAAPEYQVLKDIDGVGTAVVSTNGIFHDNEKMGIDLTRAMHATILAHKRAVH
LSANDIHAQAVAFYNLGWAEYRAHSCLPAHLRKKATRYLKAAISCFKRAIELEAGNSEFW
NALGVVTSTVNPSVSQHSFVRSLHINERGAHSWTNLGVLALLQGDLQLANEVFTKAQSAD
PDFAHAWLGQGLVALLLGDQKEARGLFIHSMDISEASSLATRRLYSVSMFDHILSSPSDL
PITSLVQPVLALGQIQGLKPQDLAYGHLSALFQERTQEYQRAAHNLENICTQAEAEYEVT
ESPQALKHFSIAKTDLARALLAQGLNVEAIEAAEIAIQLSSDESDSELTAGERKRVRLSA
HVSMGLAQYHLDHVDDAVDSFEQAIQESDGNPDVACVLAQVLWATGKDDARERARDVLFE
VIEQHPSHVQSVCLLGVIALLDKDDESLEAVVSELQNLRSGDEGVSAAEQSQLGEVLKAV
AALGAGGGGGGEEGQAQADVMFHPYLPHGWAELAGLEGTAGDGEGAAEMALRVAIKGVAP
RGDLPAEELARAYAGTGKVMDAQTAVMVAPWEGAGWRSLGDAIIRS
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaccaaggccatgctaaagtccgtcaatgacttcatcaaacagtcgaaatgg
gacgatgccagagaagccgccaacgaggtcctccaaagggaccccaaaaactaccatgct
cacatctttctggcttttgcgctggacaagaagaacatgctcgaggatgccgagaacacc
tatcttgccgccaccaacatcaaaccaggcgacacccaggcctggcaaggcctgatcagg
ctctaccaaaagcagggcaacaaaaagctaaagcagtacaaacatgctgccatcaagctt
ggcgaaatctttcgggacaccaatgagatgttcaagtttcaggacgttgtcgacaagttc
gtcgaccatgcacgtacacagggcgaacggctgcagtacgtcgatgccttggacatccaa
ctgccaggaagccctctgtacgaggccctagaaggccgtgtgcctcaccctgccaagacc
tatgagattcaggccaagattgtcgagcccgaggagaagaagcggataaacacgcttatt
ggcgagaggcgcaccagaatcggagcccgcgtcagcgaagtgactttggaggtcaagagg
gaagtctaccgccaaagcaaactcggccacatctacagacagctcatcgactggactgcc
gacgacgagctccggcgcacatgcgaagaaaagttgcttcagtattgttacgaccggctc
ttggcttggcctcctggggaggaaaagcaacaagagatggaagttgttcggaaactggca
aacgacatggtcatcattagacacccattcaagtttgcctgggacattgctctcaactgg
caggaccacaaggagatcaaggaatgggatgtcaccattctcagacaatattgctcattc
ttcccggacagtgacctgaatagagtcatcatggggtttcttactagcgacatctcgcca
ttccccaaggaaacaccagcgcaaaatgatgtcacagtggatggtgagccagaggacgag
agcgaggacgacgatgctggaggtgtgcccacaacatatgttcctctcacagaggaggac
cgactgttgatgatgacggagggcattagctctggcgattcgttgtttgcgtaccgactc
atgggcgagtactaccaacatctcgaggagtacgaaagcaacgtcgagttgatgcgtaaa
gcaatcgaccttctcaagacagagcggaccaagacaggcctggccttccggaatacagga
gatgcctactctttgtatctcggcaccgcacttgtcttttaccaatctcctcgtcaccat
caagaagccaagagcttgttcgatggtgttttggcgcacgatcccacatccaccccagcc
atgattggcgtgggtctgatttatgaggaagaagaggagtatgacgaagcagttggcttt
ttggaacgtgccctgctgggcgacccaaccaatctccgtgtcaagacggaggctgcctgg
gtcaaggctctgaaaggagactttgctgccgccaaggccgagctcgaggcctgcatgcca
ctgctgaccgagaagggacagaacaacaaggagttgctttcgcagacgaaatatcgtctc
ggttattgcatttggaacctcgacacatccaggtctgccaggaagagccgcagcggtgcc
tacagtcacttcctggagtccctcaagagcaatctcaactacgccccggcctacactatc
ctcggtatctactatgcagactatgccaaggacaagaagagagctcggagatgtttccag
aaggcagttgagctctccccatctgaagttttgtctgcagagagacttgccaggtctttt
gctgacgacggcgactgggaccgtgtcgagctcgttgctcagcgagttgttgactcgggc
aaggtcaagccgccgcctggatccaagcgcaagggtatcagctggcccttttctgctctc
ggcgtggccgagctcaacaagcaggattaccacaaggccattgtttctttccaggctgcc
ctcagaatatcaccgaatgactaccactcttgggttggtctcggcgagagctatcatggc
tcaggtcggtatatcgctgccaccaaagctcttctgaatgcccagaagctggaggagtca
cccgatgtagagatcacaggacaagagacgtggttcaccagattcattctcgccgaggtc
aagcgtgagcttggcgactttgatgacgccattgacttgtacaagcaggtcttggaagat
agaccgggggaagatggtgtcgctatttcgctgatgcaagcgatggtggacaatgctctc
gtcagtttagacaagggcttttttggcaagtctatcgaccatgctgtgtcagcgctgcgg
tttgcggttgagactcctgcggccatcaagggcactttcaacttttggagagcgattgcc
gatgcctgctccctcttcaccagcgtccaaggccggttgtcagagtttcccagggagctg
gtgcaagggctgctcggaagcgacgaggctgcccccgagtaccaggtgctgaaggatatc
gatggagtcggcaccgccgttgttagcaccaacggcattttccatgacaatgagaagatg
ggaatcgatttgaccagagctatgcatgccaccatcctggcacacaaacgcgccgttcac
ctgtctgccaacgacattcatgcccaggccgtggcgttctacaacctgggatgggccgag
tacagagctcattcgtgtcttccagctcatctgaggaagaaggctacgaggtatctcaag
gctgctatttcttgcttcaagcgagccattgagctcgaggccggcaactctgagttctgg
aacgctctcggagtggtcaccagcactgtgaacccatccgtttcgcaacactcgtttgtg
cgcagcctccacataaacgagagaggtgctcactcttggaccaatctgggtgttcttgca
ctccttcaaggcgacctccagcttgccaacgaggtctttaccaaggcccaatctgccgat
cccgactttgcccatgcctggcttggtcagggtcttgtcgctctgctcctgggtgatcag
aaggaggcccgcggcctgttcatccactcgatggacatttctgaagcatcctccctcgcc
accagacgtctgtattccgtctccatgtttgaccacatcctgtcatccccatccgacctt
cccatcacttccttggtccagcccgttctcgctctcggccaaattcagggcctcaaacct
caagatctggcctacggtcacctctctgccttgttccaggaacgaacccaagaataccaa
cgggccgcccacaacctcgaaaacatctgcacccaagccgaagcagaatacgaagtcacc
gagtccccccaagcactcaagcacttttccattgccaaaaccgacctcgcccgcgctctg
ttggcacaaggcctcaacgtcgaagcaatcgaagcagctgaaatagccattcaactctcc
agcgacgagtccgacagcgagctcacggccggggaacgtaagcgggtgcgcctctctgcg
catgtgtctatgggattagcgcagtatcacctcgaccacgtcgacgacgccgtcgactcc
tttgagcaggcgattcaagaatcggacggcaaccccgacgttgcctgtgtcctggctcag
gtcctttgggcaaccggtaaggatgacgcgcgtgagagggcaagagatgtcctgtttgaa
gtcattgagcaacaccccagccacgtccagtcggtctgcttgctgggcgtgattgcgctg
ttggataaagacgacgagtcgcttgaggctgtggtgtcagagctgcagaatcttcggtcg
ggtgatgagggggtgtctgctgcggagcagagccagctgggcgaggttctcaaggctgtg
gctgcgctgggcgctggtggtggtggtggtggtgaggagggccaggcgcaggcggatgtc
atgttccatccttacttgccgcatgggtgggcggaactggctgggctggaggggacggcg
ggggatggggaaggggcggcggagatggcgttgagggttgcgatcaagggggttgcgccg
aggggggatctgccggccgaggagctggccagggcttatgccgggacgggcaaggtgatg
gatgcgcaaacggcggtgatggtggcgccttgggagggggcagggtggaggagtttgggg
gatgccatcattcgttcttag
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integrated database retrieval system
