Podospora pseudopauciseta: QC763_509180
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Entry
QC763_509180 CDS
T09815
Symbol
RRP6
Name
(RefSeq) exosome nuclease subunit
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC763_509180 (RRP6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_509180 (RRP6)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
QC763_509180 (RRP6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
87933850
NCBI-ProteinID:
XP_062764924
LinkDB
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Position
5
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AA seq
844 aa
AA seq
DB search
MESSQDYNSLREAIQPALITVTRSAGVVANEDLQFQRTVRPSVGDKLDKTADRMLGLVNG
LLKSSSKVTGQSTTKLEDIDDIEIKWRGIVDVIDSFLEKADTCLDEYTGLIKRKNAPTVE
EGRDPKRSKSTAPLDWSLKRANIVKPQNGFEKKPNNFDKGPWKPILTKKPHAIVPLEQSF
NTILNEEHTTQYQNPYQPEIEAMKYPSHVFESREPIKYLDVESTKPIWVDTWEGALEMVE
ELKKAREIAIDLEHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLNEVFADPGI
VKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVLGYGGGSLAFLLKKFVGFEADKRWQL
ADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAAAAHTVHPDGKPIERVIAKSKKTAL
SRYENPAFDEETGLGDRGWYNYLARSSYVYNKEEFAVFRALWNWRDKTAREEDESTGFVM
KEHVMAEIVRIMPSDKKALWSLLDGHARNLKGRLDELFGVVQEGREKGLAGGVSLLQFLS
GGSGLAQAQIVPKVQKEEAVDIKELRSEKSQLWGNVPLSSAWEDKGGKKEGEDDEVLELP
LYYSAAQEEEEVGGGDVEERVPVLKSAAEVYGQEEQEQENQEFTLKTGRKRKASEADMYS
GPEEQVEDEEDVEEDVEMEDVTTPADGEQEDDSEEEDVEAAKKTAKQEKKLRRKAAKKAK
REAAAQEQAEEGDEKEAEVDEEARREAKRAERKARKAAKRAAKAQEQQQEEEEEEEEEAF
DYSKAASVLKADGGARSEFDDKRKGKKGKKEKVFDPYAAKTGSDLKGVRNRNYERAGRSA
TFRK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggagtcatcacaagattacaactctctccgagaggccatccaacccgccctcatcacc
gtcactcgatcagccggtgtcgtcgcaaacgaggatctccaattccagcgcaccgtccgc
ccatccgtcggcgacaagctcgacaagaccgccgatcgcatgctgggcttggtcaacggg
ctgctcaagtcttcctccaaggtgacgggacagtcgacgaccaagctggaggatatcgac
gatatcgagatcaagtggagaggcatcgtcgacgtgatcgattcgttccttgagaaggcc
gacacctgccttgacgagtacaccggtttgatcaagagaaagaatgcgcccactgtcgaa
gaaggccgcgaccccaagcgatcgaaatcgacggcgccgctcgactggtctctcaagcgc
gccaacattgtcaagccccagaatgggttcgagaagaagcccaataactttgacaagggg
ccgtggaagcccatcttgacgaagaagccacatgcgattgttccgttggagcagtctttc
aacaccattcttaatgaagagcacactacccaataccagaatccttaccagcccgaaatt
gaagcgatgaaataccccagccatgtgttcgagtcaagagagccgatcaagtacctcgac
gtcgagagcaccaagccgatttgggtggacacgtgggagggagcgctggagatggtcgag
gagctgaagaaggcgagggagattgcgattgatttggagcatcacgactttcggacttat
acgggtctgttgtcgctcatgcagatcagcacgagggagaaggattggattgtggacact
ttggtgccgtggaggcacaggttggaggtgctgaatgaggtttttgctgacccggggatt
gtgaaggttttccatggggcgtttatggatgtggtgtggctgcagagggacttgggggtg
tacgtggtggggttgtttgacacgcatcatgcgtcgactgtgttggggtatggggggggg
agtttggcgtttttgctgaagaagtttgtggggtttgaggcggataagaggtggcagctg
gctgattggaggattaggccgttgccggcggagatgctgtattatgcccgggctgatacg
cattacttgctttatgtctacgacatgatccggaatgatcttgctgccgcggcgcacact
gtccatccggatgggaagccgattgagcgggtgattgccaagtccaagaagactgctttg
tctaggtacgagaaccctgcttttgacgaggagactgggctgggggatcgggggtggtat
aactaccttgcgaggtcgagttatgtctacaacaaggaggagtttgcggtttttagggcg
ttgtggaactggagggataagacggcaagggaagaggacgagagcacggggtttgtgatg
aaggagcatgttatggcggagattgtgaggattatgcctagcgacaagaaggcgctttgg
agcttgctggatgggcacgcgaggaatttgaaggggaggctggacgagttgtttggggtt
gtgcaggaggggagggagaaggggcttgccgggggggtgagtttgttgcagtttcttagt
ggggggagtggtttggcgcaggcgcagattgtgcccaaggtgcagaaggaggaggcggtg
gatattaaggagttgaggagtgagaagtcgcagttgtgggggaatgtgccgttgagttcg
gcttgggaggataagggggggaagaaggagggtgaggatgatgaggtgctggagcttcct
ctttactatagcgctgcgcaagaggaggaggaggttgggggtggtgatgtggaggagagg
gttccagtgctcaaatctgctgctgaggtttatggtcaggaggagcaggagcaggagaat
caggagtttacactcaagacggggagaaagcgcaaggcgagcgaggcggatatgtactct
ggtccggaggagcaagtggaggatgaggaagatgttgaggaggatgtggaaatggaggat
gtcaccacccctgcagatggtgaacaagaagatgactcggaagaggaggatgtcgaggcg
gcgaagaagactgctaagcaggagaagaaactcagaaggaaggctgctaagaaggctaag
cgggaggcggctgcacaggagcaggctgaagagggggatgaaaaggaagcggaagtggat
gaggaggcgaggagggaggcgaagagggccgagcggaaggctaggaaggctgctaagagg
gctgccaaggcacaggagcaacagcaggaggaagaggaggaggaggaggaggaggcgttt
gattacagcaaggctgcttctgtgctcaaggctgacgggggggcgaggtcggagtttgat
gacaagaggaaggggaagaagggcaagaaggagaaggtctttgatccgtatgctgcgaag
acggggtcggatttgaagggtgtgaggaataggaattatgagagggcggggaggtcggct
acttttaggaagtga
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