Podospora pseudopauciseta: QC763_605250
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Entry
QC763_605250 CDS
T09815
Symbol
RAT1
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03008
Ribosome biogenesis in eukaryotes
ppsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
QC763_605250 (RAT1)
09123 Folding, sorting and degradation
03018 RNA degradation
QC763_605250 (RAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsp03021
]
QC763_605250 (RAT1)
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_605250 (RAT1)
03009 Ribosome biogenesis [BR:
ppsp03009
]
QC763_605250 (RAT1)
03016 Transfer RNA biogenesis [BR:
ppsp03016
]
QC763_605250 (RAT1)
Transcription machinery [BR:
ppsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
QC763_605250 (RAT1)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
QC763_605250 (RAT1)
Ribosome biogenesis [BR:
ppsp03009
]
Eukaryotic type
Pre-60S particles
RNases
QC763_605250 (RAT1)
Transfer RNA biogenesis [BR:
ppsp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
QC763_605250 (RAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
87934710
NCBI-ProteinID:
XP_062762597
LinkDB
All DBs
Position
6:901962..>905614
Genome browser
AA seq
1061 aa
AA seq
DB search
MGIPAAFRWLSTKYPKIISPVIEDTPITMEDGAVIPVDTTKPNPNGEEFDNLYLDMNGIV
HPCSHPEDRPAPKDEEEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF
RAARDAKEKEEDKEKLLKMLHKDKKGTVQVQPVEEVVQKAFDSNSITPGTPFMDILAASL
RYWCSYKLNTDPAWAKIKVIISDATIPGEGEHKIMEYVRSQRNSPGHDPNTRHVIYGLDA
DLIMLGLATHEPHFRVLREDVFAQDARPRLCKLCGQKGHDAANCRGEAKEKEGEFGEKDR
AAPLKPFIWLHVNIFREYLAVELNVPGLPFAFDLERAIDDWVFMCFFVGNDFLPHLPALE
IRENGIDTLVAIWKDNLPSMGGYLTKDGHVDLERAQLIMAGLAKQEDAIFRRRKETEDRR
EAGFKRRKLQQEKQQQRNGQGQQDSPSYRKRGQPPPETFAAASMNLISVSNIQKPAAHSI
THDMVVNRQAVDQANVANKSAASVLKSQIQSLMNKPKEEVPAPAAEEAKEPAAEEAQPKS
PPSALGKRKAELITEVDANSPAASSGAETPASGEEEAVDTVRLWEEGYADRYYEQKFKVD
PKDIEFRHKVARAYVEGLAWVLMYYFQGCPSWEWFYPYHYAPFAADFVDLGKMTINFDKG
RISRPFEQLMSVLPAASRHAIPEVFHDLMTNEDSEIIDFYPEEFDIDLNGKKMSWQGIAL
LPFIEMPRLLKAMEPKQKLLSEEDRARNEPGKEVLIISDAHPVYDDITQKFYSKKPVGDK
VEIDSALSEGLSGKIEKIEGYVPHGELRYPLERHTFPDVDFDRTLSVHYELPSSSHIHKS
ILLRGVKLPPPVLDRSDIEILKGKGRNSGRGYGGVPFHGNSGGGRGGRINYGPGGNNRGG
GGGGGYNNHYRGNSNNNNQSQGYGNGYGNGGGYGGGQQQFPPVPPPGWQPPVPPGFPGFG
QGGPPPAPPGYVPPYQQGYHQPPPPNRYAMPPVPPPGAYGGGGGYGGQGQGGYQQGRQHD
QYRPQGQHDMYRPPQGGQDRRRDGGRGGGGGGYRDNRDYRR
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgggtattcccgccgccttcaggtggctttccaccaaatatcccaagatcatctccccg
gtgatcgaggacactccgattaccatggaagatggtgccgtcatcccggttgacaccacc
aagccgaacccgaacggcgaggagtttgacaacttgtacctcgacatgaacggtatcgtc
catccctgctctcaccccgaggacaggcccgcgcccaaggatgaggaggagatgatggtt
gaaatcttcaagtacacggaccgtgttgtgaacatggtgcggccgcgcaagcttttgatg
atcgctgtcgatggtgtcgcccccagagccaagatgaaccagcagcgatcccgtcgtttc
cgcgccgcccgagatgccaaagagaaagaggaggacaaggagaagctgctcaagatgctc
cataaagacaagaagggcaccgtgcaggtccagcccgtcgaggaggttgttcaaaaggca
ttcgattccaattcaattactcctggcacacctttcatggacatcctcgcagcttctttg
cgttactggtgctcgtataagcttaacacagatcctgcgtgggccaaaatcaaggtcatc
atctcggatgccaccattcctggcgagggtgagcataagatcatggagtatgttcgatcg
cagcgcaactcgccaggccacgaccccaatactcgccatgtcatctatggccttgatgct
gatttgatcatgttgggtcttgccactcatgagcctcatttccgcgttctccgtgaagat
gtttttgcccaggacgccagacctagattatgcaagctctgcggccaaaagggacatgat
gccgcgaactgccggggagaggccaaggaaaaggagggcgaatttggcgaaaaggacagg
gctgcccctctgaagccttttatttggctccacgtcaacattttccgcgaatacctcgcg
gtggaactaaacgttcccggccttccgtttgcttttgacctcgagcgcgctattgacgac
tgggtgttcatgtgcttcttcgtcggaaacgatttcctccctcacctgcctgctttagaa
atccgagagaatggtatcgatacgctcgtcgccatttggaaggacaacctaccttctatg
ggcggttacttgaccaaagatggtcatgtcgaccttgagcgggcccagcttatcatggct
ggccttgccaagcaagaagatgccattttccggagaagaaaagagaccgaagaccggaga
gaggctggtttcaagaggcggaagcttcagcaagaaaagcagcagcaacgtaatggccag
gggcagcaggactcgccatcataccgcaagcgggggcaaccgccgccggagacctttgct
gcagcgagcatgaacttgatatctgtgtctaacattcagaagccggctgcgcatagtatc
acgcatgatatggtggtgaaccgccaggcggttgatcaggccaatgtggccaacaagagc
gctgccagtgtcctcaagagccagatacagagccttatgaacaagcccaaggaagaggtc
ccagcccccgccgccgaggaagccaaggagcccgctgcggaagaggctcaaccaaagtca
cccccgtctgctctcggcaagcgcaaggccgagctcatcaccgaagttgatgccaacagt
cccgctgcgagctcgggtgctgagactccagcctcgggcgaagaggaagccgtcgacacg
gtcaggctctgggaagagggctacgccgaccggtactatgagcaaaagttcaaggtcgac
cccaaggacattgagttcaggcacaaggttgcgcgcgcctatgtggagggtctcgcctgg
gtgctgatgtactacttccagggctgcccgtcttgggaatggttctacccttaccattac
gcgccctttgcggcggattttgtcgacctgggcaagatgacgatcaactttgacaagggg
aggatatcccgtccgtttgagcagctgatgagtgtgcttcctgccgcgtcgagacatgcc
atccctgaggtctttcatgatctcatgaccaatgaggatagcgagattatcgacttttac
ccggaggagtttgacatcgatttgaacgggaagaagatgtcgtggcaggggattgcgttg
ttgccgtttattgagatgccgcggttgctgaaggcgatggagccgaagcagaagctgctg
agtgaggaggatagggcgaggaatgagcccgggaaggaggtgttgattatttcggacgcg
cacccggtttacgatgatattacgcagaagttttacagcaagaagccggtgggggataag
gtggagattgatagtgcgttaagcgaggggttgtcggggaagattgagaagattgagggg
tatgtgcctcatggggagctgaggtatcctttggaaaggcatacgtttccggatgtggac
tttgatcggacgttgagtgttcactatgaactcccctccagctctcacatccacaaatcg
atactcctccgcggcgtgaagctacctcctcccgttctcgacaggagcgacattgagatt
ctcaagggcaagggccgcaactctggacggggctatggtggtgtgccctttcatggaaat
agtggtggcggcagaggcgggcgtatcaactatggtcctggagggaacaaccgtggcggc
ggcggtggtggtgggtataacaatcactaccgcggcaacagcaataacaacaaccagtct
caggggtatgggaatgggtatggtaatgggggtggatatggtggtgggcaacaacagttc
cctcctgttcctcctccgggctggcagccgccggtccctcctgggtttcccgggtttggg
cagggtggtccgccgccggcgccgccggggtatgtgccgccttatcagcaggggtatcac
caaccgccgccgccgaacaggtatgccatgccgccggtgccgccgccgggggcttatggt
ggcggtggtgggtatgggggacagggtcaagggggttatcagcagggtcggcagcatgat
cagtatcggcctcagggacagcatgatatgtatcggcctcctcagggaggacaagacagg
agacgggatgggggacggggtggtgggggtggtggttatagggataatagggattatcga
aggtaa
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integrated database retrieval system
