Podospora pseudopauciseta: QC763_606150
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Entry
QC763_606150 CDS
T09815
Symbol
dcl1
Name
(RefSeq) Dicer-like protein 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ppsp
Podospora pseudopauciseta
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppsp03036
]
QC763_606150 (dcl1)
Chromosome and associated proteins [BR:
ppsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
QC763_606150 (dcl1)
microRNA pathway
RISC loading complex
QC763_606150 (dcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DSRM_2
ResIII
Helicase_C
DEAD
dsrm
Dicer_platform
ERCC3_RAD25_C
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
87934800
NCBI-ProteinID:
XP_062762699
LinkDB
All DBs
Position
6:1269089..1274060
Genome browser
AA seq
1568 aa
AA seq
DB search
MSPGVLLSPPGSLVEGDLLSLYGSTPDTASQTSPDASSEANDDVDTDRDEDDGSGRGKIF
EVNDPPGPRKMSEKRRADNAKFDIWLEENQQNLSKGAGKLVLDEERSANWLMREFENKKI
ITSPRDYQLELFERAKTQNTIAVLDTGSGKTLIAALLLRWTIQNELENRSQGQPKRIAFF
LVDKVALVFQQHAVLTCNLDYSVAKFCGQMLDRSSAEFWETTFQENMAIVCTSEILYQCL
HHSYIRMDQINLLIFDECHHTKKNHPYARIIKDFYIQNEDNEARPRILGMTASPVDAQID
PRIAAAELEGLLHSQIATVSDPTIIQHTISCPKEEIVLEYDRRPRQWTTPLHQSIKALVG
NHDHFTKAFVFTSQATAELGPWCADRYWQLFFNQDDIAKLETQAERSLLRQGAFSQLMGL
DKNRVREAHELVKNHEFEQPILDTRLFSSKVIELWKTLHDQFSSQDLIRRCIVFVKQRNT
ANILVDLLKQPELKIPGLEPGILIGGGRNDSSWESSKTSYRDQVLTIIKFKKGELNCIFA
TSVAEEGLDIPDCNIIIRFDLYDTLIQYIQSRGRARQEKSTYIHMIERGNSEQLQKMKQL
KQSEDGLRKFCEAMPDTRKLTGNNFKMDYFLRKEKGQRQYTVPETGAKLNYKQSLICLAN
FVSSLPHPPETNLAPEYMVNTTEGGFQCEVILPAASPIRSAIGKVHGSKAVAKCSAAFEM
CLQLVRGNYLDAHLRPTLTKQLPAMRNARLAISSKKKEEYGMRMKPEVWSTLGEPTELFV
TALTLESPDSLGRPSLPLLLLTRRRIPQVASFPIYFGKSRSSIVNFVLAGEPIEVDEAEL
TSLTAFTLSIFKDVFSKEYEATFLDLPYFLAPTCKDHSFDFSAPASDELIDWDTVKYVQE
NNIVTYNFDEPDDFFEHKYVWDPWDGARKFYLRGRRHDMKPTDPVPEGIVAPGHRAWRTT
CDAHDILNYSNSLWSKSRAKFKSRGDQAVVEAELLSTQRNLLDDSLEGEDLEPKQCFLVL
EPLKISPLPVQVVAMAYNFPAIIHRVDSNLVALDACNMLGLNIRPDLALEAFTKDSDNTD
EQDVEQVNFQRGMGNNYERLEFLGDAFLKMATTIAIYTLIPDKDEFEYHVERMILICNRN
LFNNALEVKLEEYIRSMAFNRRTWYPEGLTLKRGKRKDIRKKHVLADKSIADVCEAIIGA
AYLTAQEAGNFDMAIQAVTRMVNDKNHTMQTWSDYYAVYKKPAWQTMPTNSVQEDMAEKF
HKRMGYRFQYPRLLRSAFQHPTYPTSWERLPSYQRLEFLGDALLDMACIDHLFHRFPGTD
PQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIEEALAAAKVAAV
QEDKSESEFARDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTVQDFFDKHIQFWFED
MRLYDTFANKHPVTFLGHEMQHRFRCQEWRLLTREIMVDNDEEGGMMGEKQVVCAVMVHG
QKLAHAVAQSARCSKIEAAKKALRELEGWEQGEFRRRVGCDCKVVGEVEGKDGEKGEEVE
IEVYGDTI
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgggtgtgcttctatcaccgccgggcagcctagttgagggtgacctattgagt
ctgtatggttcaaccccagacactgcaagtcaaacctcgccagatgccagcagtgaggcg
aatgacgatgttgacaccgacagagacgaggacgatggcagtggtagaggcaagatattc
gaggtcaacgatccgccagggccgcgcaagatgtccgagaagaggagagcagacaatgca
aagtttgacatttggctagaggagaaccagcagaacctgtccaaaggagctgggaagctg
gtgttggatgaggagaggtctgccaactggctgatgcgcgagttcgagaacaaaaagatc
atcacgagcccgcgagattaccagctggagctttttgagcgggccaagacccaaaacaca
atcgcagtgctggacaccggatcgggaaaaacgctcattgccgccttgcttctgagatgg
acgatacaaaacgagctcgagaaccgatcccaaggccaaccgaagcgcattgccttcttt
cttgtggacaaagtagctctcgtctttcagcagcatgcagtcctgacgtgcaacctggac
tactcggtagccaagttttgcggacagatgctcgatcgatcgtcagcggagttttgggag
accacattccaggagaatatggccattgtctgcacctcggagattctctaccaatgcctc
caccattcatacatccgcatggaccagatcaatctcttgatatttgatgagtgccatcat
accaagaaaaaccacccctatgcccggatcatcaaagacttctacatccaaaatgaggac
aatgaagcacggccgcgcatcttgggaatgaccgcctctcctgttgatgcccagattgac
ccaagaattgctgccgctgagctcgagggtttgcttcacagccagatcgccacagtttct
gacccaaccatcattcaacataccatcagttgtccaaaagaggagatagttctggagtac
gacagaaggcctcggcagtggacgacccctcttcaccagtccatcaaggctctggttggg
aaccatgatcacttcacaaaggcgtttgttttcacctcacaagcaacagccgaactgggg
ccatggtgtgctgaccggtactggcaactcttcttcaaccaagacgacatcgccaaactc
gagacccaagcggagcgaagtctgcttcgccaaggagccttcagccaactcatgggtctt
gacaagaacagagtgcgggaggctcacgagcttgtgaaaaatcatgaatttgaacagcct
attctggacactcggctattctcctccaaggtcatcgagctctggaagactcttcatgat
cagttcagcagtcaggatcttataagacgatgcatcgtctttgtgaagcagagaaacaca
gcaaacattctcgttgacctcctcaaacagccggaactcaaaattcctggtcttgagcca
ggtattcttattggcggcgggagaaatgattccagctgggagagctccaagactagctac
cgcgatcaggtcctgaccatcatcaagttcaagaaaggagagctcaactgcatctttgcc
acctcggtcgcggaagagggccttgatattcctgattgcaacatcatcatcaggttcgac
ttgtatgacacgttgattcagtatatccaatctcgtgggcgcgctcgtcaagaaaagtcg
acctacatccacatgattgagagagggaactccgagcaattgcaaaagatgaaacagctc
aagcagagcgaagacggactcaggaagttttgcgaggcgatgccggacacgcgaaagctg
accggaaacaacttcaaaatggactactttctgaggaaagagaaaggccaacgacagtac
actgttccggagactggggcaaagttgaactacaagcagagtctcatctgtcttgccaac
tttgtgtcatcactcccacacccgccagaaacgaacctagcaccggaatacatggtcaat
accaccgagggcgggtttcagtgtgaagttatcttaccggctgcatctccgatcagatct
gccatcggaaaagtgcacggcagcaaggcagtagccaagtgttcagcggcctttgagatg
tgtcttcagcttgttcggggcaactatttggacgctcaccttcgaccaactcttaccaag
cagctccccgccatgcgtaatgcccgtcttgccatcagttccaagaagaaggaagagtat
ggcatgcgcatgaagccggaggtctggtcaactctcggcgagcccaccgagctctttgta
acggccctgactttggaaagtccagattcacttggcagaccgtcattaccactgttgctg
ctcacacgaagacggattcctcaagttgcttcgttccctatctattttggaaagtctcgt
tcctcaatcgtcaatttcgtactggcaggtgagcccattgaggtggatgaagcggagcta
accagcttgaccgccttcactctttcgatattcaaggatgttttcagcaaggagtacgag
gcgacatttttggacttgccttattttctggctccgacttgcaaagaccactccttcgat
ttttccgcgccggcatcagacgagcttatcgattgggacaccgtcaaatacgtccaagaa
aataacatcgttacttacaactttgacgaaccggatgacttctttgagcacaaatatgtc
tgggacccctgggatggtgctcgcaaattctaccttcgtggacgccgtcacgatatgaaa
cctacagaccctgtgcccgaaggcattgtcgcccccggccacagggcttggaggacgacg
tgtgacgcgcatgacattctgaactacagcaacagtctgtggtccaagtcccgagccaag
ttcaagagccggggcgaccaagcagtggtggaggctgaactattgtctacccagcgtaac
cttttggatgacagtctggagggcgaagacttggaaccaaagcagtgcttcttggtttta
gaaccattaaagatctcaccacttccagttcaggttgtggctatggcctacaactttcct
gccatcattcaccgagtcgattccaacttggttgccttggatgcgtgcaacatgctgggg
ttgaatatcaggccagacttagcgcttgaagccttcaccaaggacagcgacaacactgat
gaacaggatgttgagcaggtgaatttccagcgcggcatgggcaacaattacgagagactg
gagtttttgggcgatgctttcctcaaaatggccaccacaattgccatctacaccctcatc
cctgacaaggacgagtttgagtaccacgtcgagcgcatgatcttgatttgcaaccggaac
ctcttcaacaacgcacttgaggtcaagctagaagagtacattcgatccatggccttcaac
cgccgcacttggtacccagagggcttaactctcaagcgcggcaaacgaaaggacatcagg
aagaagcatgtcttggccgacaagtctattgccgatgtctgcgaggccatcatcggcgcc
gcctaccttactgcacaggaagctggcaactttgacatggccattcaagcagtgacgaga
atggtgaatgacaagaaccatacgatgcagacatggtctgactactacgcagtgtacaag
aaacctgcgtggcagactatgccaacaaacagcgtgcaggaagacatggccgaaaagttt
cacaagaggatgggttatcgatttcaatatccccgtctgctgaggagcgcgttccagcac
ccgacttacccaacctcgtgggagaggctccccagctaccaacgtcttgagttccttggc
gacgctttgttggacatggcatgcattgaccatctcttccatcgcttcccagggaccgac
ccccagtggctgaccgaacacaagatggccatggtctccaaccagttcttgggctgtctc
gcagtctacattggcttccaccgatctctccagcacagctcgcctgcggtccagtccgaa
atcgcgtcatacgtcacagaaattgaggaggccctcgccgctgcgaaagtcgctgccgta
caagaagacaagtcagagtccgaatttgcgagagacttttgggtggactgctcccgccct
cccaagtgcctcccagatacgatcgaagcttacgtcggcgccatattcgtcgactcctcc
tacgactaccaaaccgtccaggatttctttgacaagcacatccagttctggtttgaggac
atgaggctgtatgacacgtttgccaataaacaccccgtgacatttctgggtcatgagatg
cagcatcggtttcggtgtcaggagtggcggttgctgacgagggagattatggttgataat
gatgaggaggggggtatgatgggggaaaagcaggttgtttgtgcggtgatggtgcatggg
cagaagctggcgcatgcggtggcacagagtgcgaggtgttccaagattgaggcggcgaag
aaggcgctgagggagttggaggggtgggagcagggggagttcagacggagggtagggtgt
gattgtaaggtggtaggggaggtggaggggaaggatggggagaagggagaagaggttgag
attgaggtgtatggggatactatttga
DBGET
integrated database retrieval system
