Podospora pseudopauciseta: QC763_608390
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Entry
QC763_608390 CDS
T09815
Symbol
PAT1
Name
(RefSeq) DNA topoisomerase 2-associated protein pat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC763_608390 (PAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsp03019
]
QC763_608390 (PAT1)
Messenger RNA biogenesis [BR:
ppsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
QC763_608390 (PAT1)
mRNA degradation factors
5'-3' decay
Decapping complex
QC763_608390 (PAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
87935009
NCBI-ProteinID:
XP_062763407
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Position
6:complement(3501425..3504932)
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AA seq
840 aa
AA seq
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MSFFGFNNGHNTAATGFSQAHNPFQGLSGRDDDGDALEFEDTYDGLGDQLEETKDAYNDD
TFGDTSDIAAAPVGKDFDFFSQTAKVQNAIEEEHYLFNRQQPPARSAQPAQPVQQMSYGQ
PSLQSAASYGYTSQGHYRTGYEKYSNDKYNNNEPVPELQVDASLWGVAPKKPAQPAPQVS
QQAAQSSSAPSRKILSLEEVEAQMRAQAQAKAAQATPSPAPHAQGPSQIPYDPAIQFAQP
AQQQFVPPVDHTRQALPIHVLQRPQSTQAPSPQPPVQPAAHQRQPSSTSVQPTQILQNPN
RLSGDAARMGMQQHPTPPVSGPSAPPTQPAHRQQGSFGRQSNIITHPSQVSQLTEEQRAA
YMEQEAKRAKRNHKIYLMSRDNGVMTPQDKSFVTRIQLQQLVAATGNPNEHGSDESLAED
FYYQVHSSLQGGQRQHPNQPLNNFAQTYLFQTGNRSGHMRRHRGPENHMQRMEQQVQRAV
EAAKNKPKNKQLVIEGSLGKISFSNAKTPKPLLNIKRTESTDDANRPSSAHKVVSAGDRK
SDLRTIERIYTILMKMEDHDRVLPPPPTSDTDAEGHQRGMRWSNEAQALNQDLWSALRVY
DEPQPGHPHPFVALLSYNKGMKAMNRIFRHLSQEQRTTILTLVIVNLDKLDVVVNAQVTS
AAVQLTAAMRENIHIFSNAVMNTLFNFLNELDLDIVAGLLSILSKQRLDIIAKSRIGASM
ITMILSRAEIIKVNVGNTHPSWQAWDMCHTDFFDRLEPTLPYMFPGSVNTADDIYVWQLL
AALGIGASPEQQQRLVLAVKDRVMDTVALSKTLPADMGAQRLQNVNLFMRSIGLDVELLQ
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttctttggattcaataacggccataacacggcggccactggcttttcacaggcc
cacaatcccttccaaggcctttctggccgagacgacgatggcgatgctttggagtttgaa
gacacctatgacgggcttggagatcagctcgaagaaacaaaggacgcctacaacgatgat
acttttggggatactagcgacatagctgccgcgcctgttggcaaggattttgatttcttc
tcgcaaactgccaaggttcagaatgccatcgaggaggaacattatcttttcaaccgtcag
caaccgccggcccggtccgcccagcctgcccagcctgtccagcagatgtcttacggtcag
ccgtctcttcaaagcgcagcctcgtacggctatacatctcagggccactatcgcaccggc
tacgagaagtattcaaatgacaagtacaacaacaacgagccggttcccgaattgcaggtc
gatgcctctctctggggtgtggcgccgaagaagccggcacagcctgcccctcaggtctcc
cagcaggctgcccagtcgagttccgcgcccagtcgcaagattctaagcttggaggaagtc
gaggctcaaatgagagctcaggcccaggccaaggctgcccaagctacaccatctccggct
cctcatgctcaaggcccttcgcaaatcccttatgacccggccattcaatttgctcaaccg
gctcagcaacaatttgttcccccggttgatcataccagacaagctctcccgattcacgta
ctgcaaagacctcagtccacccaagcgccttcgccccagcccccggtccaacctgctgct
catcaacggcaaccgtcatcgacttctgttcagccaactcaaatcttgcagaatccgaat
cgtctctctggagatgccgctagaatggggatgcagcagcatcccacgcctccggtatca
gggccttctgcccccccaactcaacccgcccatagacagcagggttctttcgggagacag
tccaacatcataacgcatccatcccaggtgtcccaacttaccgaagagcaaagggccgcc
tacatggaacaggaggctaagcgtgctaaacggaaccacaagatctacctgatgtctcgt
gacaacggtgtcatgacaccccaggacaaaagcttcgtcacacgcattcagcttcagcag
cttgttgccgccactggcaatccgaacgagcacgggagtgatgagtcgcttgccgaagat
ttttactatcaagttcatagctcgcttcagggcggtcaaaggcaacaccccaaccagccg
ctcaacaactttgcacagacctatcttttccagactggcaacaggtcgggtcacatgcgt
cgccaccgaggccctgagaatcatatgcagcgtatggaacagcaggtccagcgagctgtt
gaagctgccaagaacaagcccaagaacaagcaactcgttatcgagggaagtctgggcaaa
atttcattcagcaacgccaagacacccaagccgctgcttaacatcaagcgcacagagagc
accgatgatgccaaccgtcctagcagtgcgcacaaggtcgtcagtgccggcgatcgtaag
agtgatctgcgcaccattgaacgcatctataccatactcatgaagatggaagaccacgac
cgcgtcctgccacctccccctacaagcgacaccgacgctgaaggtcaccagcggggcatg
cgttggagcaacgaagcccaagccctgaaccaggatctgtggtccgcgctgagagtctac
gatgaacctcaaccgggacacccccatccttttgttgcgcttctgtcatataacaagggt
atgaaggctatgaacaggatcttccgccatctcagccaggagcagcgcaccaccattctc
accttggttatcgtcaatcttgacaagcttgatgttgttgtcaacgcccaggtgacgtcc
gccgcggtccagctgacagctgcaatgcgcgagaatattcacattttctccaacgccgtc
atgaatacgctcttcaacttcttgaacgagctcgatcttgacatcgttgccggtctgttg
tctattctttccaagcaacgattggacattattgcaaagagtcgcatcggagcttcgatg
atcaccatgatcctgagccgcgccgaaattattaaggttaatgttggaaacacccatcca
tcctggcaggcttgggacatgtgtcacactgactttttcgatcgtctcgaacctacgctt
ccctatatgtttcctggctctgtgaacaccgccgatgacatttacgtatggcaactgctc
gcggcgcttggcataggagctagccccgagcagcagcagaggcttgtacttgctgtcaag
gaccgcgtcatggatacggtcgctttgtcaaagacactccccgcagacatgggcgcccag
cgtctccagaatgtgaacctcttcatgcgcagcattgggttggatgtcgagctgctacag
taa
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