Podospora pseudopauciseta: QC763_710060
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Entry
QC763_710060 CDS
T09815
Symbol
cdc17
Name
(RefSeq) ATP-dependent DNA ligase Cdc17
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03030
DNA replication
ppsp03410
Base excision repair
ppsp03420
Nucleotide excision repair
ppsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QC763_710060 (cdc17)
03410 Base excision repair
QC763_710060 (cdc17)
03420 Nucleotide excision repair
QC763_710060 (cdc17)
03430 Mismatch repair
QC763_710060 (cdc17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsp03032
]
QC763_710060 (cdc17)
03400 DNA repair and recombination proteins [BR:
ppsp03400
]
QC763_710060 (cdc17)
Enzymes [BR:
ppsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QC763_710060 (cdc17)
6.5.1.6 DNA ligase (ATP or NAD+)
QC763_710060 (cdc17)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
QC763_710060 (cdc17)
DNA replication proteins [BR:
ppsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
QC763_710060 (cdc17)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
QC763_710060 (cdc17)
DNA repair and recombination proteins [BR:
ppsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
QC763_710060 (cdc17)
NER (nucleotide excision repair)
Other NER factors
QC763_710060 (cdc17)
MMR (mismatch excision repair)
Other MMR factors
QC763_710060 (cdc17)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
87936338
NCBI-ProteinID:
XP_062762005
LinkDB
All DBs
Position
7
Genome browser
AA seq
956 aa
AA seq
DB search
MPPKGSRQATLGKFFTQANGAAIPEPKVVAQNKTQTKLSFSTKVGEEQSPKRKKKDEEEE
VSSDAEGGEEGVKPVEKKKKRGRPVKAAIITTTEKKMRKKEVDEDGDESMEDAEPAQKKA
RKGGRRVVRDEEDGDESMEDAPAPVEDGRVSSPEGYQYEKGSEPRMLNATPKKRQGKKVR
QDEKEWNLGVESPEGYDYKGGSPPKLFKGDRLVAVGGKKVGKEEAGKKEGEKAGEKAVEK
EEEVVKEGEETASSASDVEMEEEEEKPEVAKKVRQKVQATLKSADEHPFPDWKAGEPVPY
AALCTTFSLVELTTKRLEIMAHCALFLRQVLRLTPDDLLPVVLLMINKLAPDYAGIELGI
GESLIMKAIGESTGRSLAIIKQDQKEIGDLGLVAVKSRSTQPTMFKPKPLTVRGVLKGLM
GIATTTGNGAQGRKVDGIKKLLSQADANGAKKVDITKDKGGPSEAKYLVRFLEGKLRLGL
AEKSVIVSLSQAVVAHEAAQKGVAPSAADFEKGEAILKTVYSELPSYDVIIPAMVEHGIM
NLRDHCKLRPGVPLKPMLANPTKAITEVLDRFENKLFTCEYKYDGERAQIHYVAKDTAEE
LSQSAANASKEVGNGVAAIFSRNSEDLSKKYPDVLAKLSTWVKDDTKSFVLDCESVAWDV
DEKKVLPFQQLMTRKKKDVKIEEVKVKVCVFAFDLLYLNGEAVVNKSLRERRELLYKSFT
PVEGEFAFATSMNGQELDEIQTFLDESVKASCEGLMVKMLDGEESGYEPSKRSRNWLKIK
KDYLAGIGDSLDLVVLGAYFGKGKRTSVYGAFLLACYNPGTDTYETVCNIGTGFSEAVLE
ELHAQLSKITIDRPKPFYAHSSGGQHQPDVWFEPKYVWEVKTADLTLSPRYKAGMKEGVD
PSGEKGISLRFPRFIKVRDDKKPDEATSSRQVAEMYRKQESVSKSKGPSVDDDFEY
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctaaggggagtaggcaggctacgctggggaaattcttcacccaggccaacggc
gctgcgattccggagccaaaggtggtggcgcaaaataaaacgcagacgaagttgagtttt
tcaaccaaggtgggggaggagcagagccccaagaggaagaagaaggatgaagaggaggag
gtgagctctgatgctgaggggggagaggagggggttaaaccggtggagaagaagaagaaa
cggggccggcctgttaaggctgccatcatcactacgacggaaaagaagatgagaaagaag
gaggttgatgaggatggggatgagagcatggaggatgcggaacctgcgcagaaaaaagcg
aggaagggggggaggagggtggtgagggatgaggaggatggggatgagagtatggaggat
gcgccggcgccggttgaggatggcagggtgtcctcgccggaggggtatcagtatgagaag
gggagtgagccgaggatgttgaatgcgacgccgaagaagaggcaggggaagaaggtgaga
caggatgagaaggagtggaatctgggggtggagtcgccggaggggtatgattataagggt
gggagtccgccgaagcttttcaagggggataggttggttgctgttggggggaagaaggtt
gggaaggaggaggcggggaagaaagagggggagaaggccggggagaaggcggttgagaag
gaggaggaggttgtcaaggagggagaggagacggcgtcctcagcttcggatgtggagatg
gaggaggaggaggagaagccggaggtggccaagaaggtgaggcagaaggtgcaggctacg
cttaagagtgctgatgagcatccttttcctgactggaaggctggggagccggtgccgtat
gctgctctctgcactacgttttcgctggtggagctcacgacgaagaggctggagattatg
gcgcactgtgcgctgtttttgagacaggttttgaggctcacgccggatgatcttttgccg
gtggtgctgcttatgatcaacaagcttgctcctgactatgcgggtatcgagctgggcatc
ggagagagtttgatcatgaaggctatcggagagtcgacgggcagaagtctggcgattatc
aagcaggatcagaaggagattggtgatctgggcttggtggcggtcaagagcaggtcgacg
cagccgaccatgtttaaaccaaagccattgactgttaggggtgtgctgaaggggctgatg
ggcattgccacgacaacgggcaatggagctcaggggaggaaggtggatgggatcaagaaa
ctgctttcccaggctgatgccaacggggcgaagaaggttgatatcaccaaggacaagggc
gggccgagtgaagccaagtatctggtcaggttcctggaggggaagctgagattgggtctg
gcggagaagtcggtcattgtcagcttgtcacaggcggtagttgcgcacgaggcggctcaa
aagggggttgcgcccagtgcggctgactttgagaagggcgaggcgatcctcaagactgtc
tacagcgagctgccaagctacgatgtcatcattccggctatggttgagcacgggatcatg
aacctgagggatcactgcaagttgaggcctggtgttcccctcaagcccatgttggccaat
cctaccaaggctatcaccgaggttctggaccggtttgagaacaagcttttcacttgcgag
tacaagtacgatggtgaaagagcgcagattcattatgtggcaaaggacactgctgaagag
ctcagccagtcggccgcgaatgccagcaaggaggtgggtaatggtgttgcggcgatcttc
tcgagaaactcggaggatctgtccaagaagtaccctgacgtcttggccaagctgtctact
tgggtcaaggatgacacgaagagctttgtcttggactgcgagtcggttgcttgggatgtg
gatgagaagaaggtgttgcctttccagcagctgatgacgcgcaagaagaaggacgtcaag
attgaggaagtcaaggtcaaggtttgcgtctttgcgttcgatctgctttatctgaacggg
gaggcggtggtgaacaagtcgctcagggagaggagggagctgttgtacaagtcgtttact
cctgtcgagggcgagtttgcgtttgcgacgtcgatgaatgggcaggagctggatgagatt
cagacgttcttggatgagtcggtcaaggcttcgtgtgaggggttgatggtgaagatgctg
gatggggaggagagcgggtatgagcctagtaagaggtcgaggaattggttgaagatcaag
aaagactacctcgccggcatcggcgactcgctcgacctcgtcgtcctcggcgcctacttt
ggcaagggcaagcgcacctctgtctacggcgcctttttgctggcgtgctacaaccccggc
acggacacgtacgaaacggtctgcaacattggcaccggcttcagcgaggctgtgctcgag
gagctgcatgcccagctctccaagatcacgattgatcgccccaagccgttttacgcccac
agcagcgggggccagcaccagccggacgtgtggtttgaacctaaatatgtctgggaggtc
aaaacggcggacttgacgctgagcccgaggtacaaggcggggatgaaggagggggttgac
ccgagcggggagaaggggatcagcttgaggtttccgaggtttatcaaggtgagggatgac
aagaagccggacgaggcgacgagcagtcggcaggtggcggagatgtatcggaagcaggag
agtgtgagtaagagcaaggggccgagtgtggatgatgattttgagtattag
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