Peribacillus psychrosaccharolyticus: I6J18_13835
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Entry
I6J18_13835 CDS
T07206
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppsr
Peribacillus psychrosaccharolyticus
Pathway
ppsr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J18_13835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsr03021
]
I6J18_13835 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppsr03400
]
I6J18_13835 (rpoC)
Enzymes [BR:
ppsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J18_13835 (rpoC)
Transcription machinery [BR:
ppsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J18_13835 (rpoC)
DNA repair and recombination proteins [BR:
ppsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J18_13835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3310
Motif
Other DBs
NCBI-ProteinID:
QQS98779
UniProt:
A0A974RZZ9
LinkDB
All DBs
Position
complement(2704975..2708574)
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTETGDTSLEKKQLLSEKEYRAYREKYGKKFQAAMGAEAIKKLLQ
DIDTEKEGEALKEELKTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVQKGLAHNIKSAKRKIERLSPEIWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGVIGEGMIFKDTSEALIAYQNGYVHLHSRVAVA
ASSMNNETFTDEQNNQLLITTVGKMIFNEILPKSFPYINEPTAYNLEVKTPEHYFVEKGA
NIPELIKAQPIVDPFKKKILGNIIAEVFKRFKITETSKMLDRMKNLGFRHSTKAGITVGV
ADIVVLGEKQEIITEAQVKVDNVMKQFRRGLITEDERYDRVISIWSAAKDTIQSKLMNSL
DRHNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRDDDCGTDRGLLISPLREGTEIIETLE
ERLIGRYARKAIRHPETNELIVAQNDLITEDLAKYIQDAGIEQAWIRSAFTCNTSHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAIISEIEGTVVSINEIRDKQQEIVVQGAIESRTYTAPYTARLKVTVDTQVRR
GEELTEGSIDPKELLKVTNVLTVQEYLLHEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
NDAGDTDVLPGTLLDVNQFTTANTSAVVGGKTPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLIPAGTGMLRYRKANPVLADGTAEDTVSVD
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgttagacgttaataattttgagtatatgaaaattggtctagcatcaccggacaagatt
cgttcttggtcccatggtgaagttaagaagccagaaaccattaactatcgtacattgaaa
cctgaaaaagatggtctgttttgtgagagaatatttggaccacaaaaagattgggaatgt
cattgcggaaaatacaaacgtgtacgctataaaggcgtagtttgtgaccgttgtggtgta
gaagtaactcgtgcgaaggtccgtcgcgaacgtatgggccacattgaactagctgctcct
gtatcacacatctggtatttcaaaggaatcccaagccggatgggtctcgtactagatatg
tctccacgtgctttggaagagatcatttactttgcatcatacgtagtcactgaaacaggc
gatacttctttagaaaagaaacaacttctttctgaaaaagaataccgcgcataccgtgaa
aaatacggtaagaagttccaagctgcaatgggtgccgaagctatcaaaaaactcttacaa
gatattgatactgaaaaagaaggcgaagccttgaaggaagagcttaagacagctcaaggc
caacgtagaacacgggcaattaaacgcctagaagttctagaagctttccgtaattctgga
aatgaaccttcttggatgatccttgatgttctgccagttattcctcctgaacttcgtccg
atggtgcaattagatggcggacgttttgcaacatctgatttgaacgatctttaccgtcgt
gttattaaccggaacaatcgtttaaagagactattagaccttggagctcctagtatcatt
gttcaaaatgaaaaacggatgctgcaagaagctgtagatgctctaatcgataacggtcgc
cgcggccgtccagttacaggaccaggtaatcgtccgcttaaatcattgtcacatatgtta
aaaggtaaacaaggacgtttccgtcagaatcttcttggtaaacgtgtagattactctggc
cgttctgtaattgttgttggaccaaacctaaaaatgtatcagtgtgggttaccgaaggaa
atggcgattgaattatttaagccgttcgtaatgaaggagcttgttcaaaaaggacttgca
cacaacattaaatcggcaaaacgtaaaatcgaacgtctatctccagaaatatgggatgta
cttgaagaagttattagagaacaccctgtattgttaaaccgtgcaccaacattgcataga
cttggtatccaagcctttgaaccaactttagtagaaggacgcgcaattcgccttcatccg
ttagtatgtactgcatacaatgcggattttgatggtgaccaaatggccgtccacgttccg
ttatcatctgaagctcaagctgaagcacgtcttttaatgcttgctgcgcaaaacatcttg
aatcctaaagatggtaagccagttgttaccccttcacaggatatggttttaggtaactat
tacctaaccttagaaagagaaggagtaataggagaaggcatgatctttaaagatacaagc
gaagctttaattgcgtaccaaaatggatatgtacatcttcattctcgtgtagcagttgca
gcctcttctatgaataacgaaacatttactgacgaacaaaacaatcagcttttgattacg
acagtaggaaaaatgatcttcaatgaaattttacctaaatcgttcccttatattaatgaa
cctacagcatataacttggaagtgaaaacgcctgagcattattttgttgaaaaaggtgca
aatatacctgaactgattaaggcacaaccaattgttgatccgttcaagaagaaaattctt
ggaaatatcattgctgaagtcttcaaacgtttcaaaataacagaaacatctaaaatgctt
gaccgtatgaagaatcttggtttcagacactcaactaaagctggtattaccgttggtgta
gcagatattgttgtattaggtgagaaacaagaaattattactgaagcacaggttaaagtc
gataatgttatgaagcagttcagacgtggtcttatcactgaagatgaacgttatgatcgt
gtcatttcaatatggagtgcggcaaaggatacaattcagtctaaactaatgaattccctt
gatcgtcataatccaatcttcatgatgagtgactctggtgcccgtggtaacgcatctaac
tttacacagttagctggtatgcgcggactgatggccaacccggctggacgtatcattgaa
ttaccgattaaatcaagtttccgtgaaggcttaacggttctagaatacttcatctcaaca
catggtgctcgtaaaggtcttgcggatacagccttgaaaacagctgactcaggttacctg
acacgccgtctagttgatgtagcgcaagatgttatcattagagatgatgattgtggaaca
gatagaggtctcttgatttctccacttagagaaggtactgaaatcattgaaactcttgaa
gagcgtttgattggccgttatgcacgtaaagcgattagacatccagagacaaatgagctg
attgtagctcaaaatgatctaattactgaagatcttgcgaaatacattcaagatgcagga
attgaacaagcatggattcgttctgcatttacgtgtaatacaagtcatggtgtttgtaag
aaatgttacggacgcaacttggctactggtcaagaagttgaagttggcgaagctgtggga
atcattgctgcccaatctatcggtgaaccaggtactcagttaacaatgcgtaccttccat
actggtggtgtggccggagatgatattacacaaggtcttcctcgtatccaagaaatattt
gaagctcgtaatcctaaagggcaagcaattatttctgagattgaaggaacggttgtttcg
attaacgaaatccgtgataagcaacaagagattgttgttcaaggggctatcgagtcacgt
acgtatacggcaccatatacagcacgtcttaaagtgactgttgatacgcaagtacgccgt
ggtgaagaattaacagaaggatcgattgatccgaaagaactattaaaagtaaccaatgtt
cttactgttcaagaatacctgcttcatgaagttcaaaaggtatatcggatgcagggtgtt
gaaattggtgataaacatatcgaagttatggttagacaaatgcttcgtaaggtacgtgta
aatgatgcaggggatacagatgttcttccgggaacactgcttgacgtgaatcaatttact
actgctaatacaagcgcagttgttggcggtaaaacaccagctactggtcgtccagtcttg
ctcggtattacaaaagcatcacttgaaacagattcattcttatcggctgcgtcgttccaa
gaaacgacaagagtgctcacagatgctgcaattaaaggtaaacgtgatgaattgctcggc
ctgaaggagaatgtaattattggtaagctgattccggctggtacaggtatgcttcgttac
agaaaagcaaacccagttttagcagatggaacagctgaagatactgtttcggtagactaa
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integrated database retrieval system
