Peribacillus psychrosaccharolyticus: I6J18_16515
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Entry
I6J18_16515 CDS
T07206
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppsr
Peribacillus psychrosaccharolyticus
Pathway
ppsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J18_16515 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsr03019
]
I6J18_16515 (rnr)
03016 Transfer RNA biogenesis [BR:
ppsr03016
]
I6J18_16515 (rnr)
Enzymes [BR:
ppsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6J18_16515 (rnr)
Messenger RNA biogenesis [BR:
ppsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6J18_16515 (rnr)
Transfer RNA biogenesis [BR:
ppsr03016
]
Prokaryotic type
tRNA degradation factors
I6J18_16515 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
OB_Dis3
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QQS99229
UniProt:
A0A974S0G2
LinkDB
All DBs
Position
3276333..3278711
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AA seq
792 aa
AA seq
DB search
MEDKIRYFNDKLLSYMKDEAYKPLTVQELEEALGIEDSLDFKDFVKALVKMEEKGSVIRT
RNNRYGLPQKMNLIRGKLSGHPKGFAFVTPDEPAGVDDIFIPPNETKNAMHGDIVLVRVS
SESSGSRREGSVEKIIDRGIKEVVGTYSESKNFGFVIPDDKKIANDIFIPKNVSRGAVEG
HKVVVRLTSYPEGRTSAEGEVLQILGHKNDPGVDILSVIHKHGLPMEFPEDVLNQANEVP
DTIEESDIGNRRDLRGETLVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSHYVTEN
SPLDREAFERATSVYLVDRVIPMIPHRLSNGICSLNPQVDRFTLSCEMEFDAKGKVVNHD
IFESVIRTTERMTYNDVKKILVDKDEELLERYEPLVPMFQQMEELAAILRMKRMERGAID
FDFKEAKILVDDEGHPTEVVVRERSVAERLIEEFMLAANETVAEHFFRLKVPFLYRIHED
PKEEKLQRFFDFITNFGYVIRGSASSIQPKALQQIIEAVAGKPEEMVISTVMLRSMQQAK
YDPESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGNQSEATKAKWDAMLPEIA
DHTSKRERRAVDAERETDDLKKAEYMLDKIGEEFDGIIGSVTNFGMFVELPNTIEGLVHV
SAMTDDYYRFDERQLAMIGERTGKVFRIGDEISIRVANVNKEERAVDFEILGMVNSRPRT
SGSKQIFKANPDGTNRRRKDSGGSSDRKGSGNGQGSGRNAKNGAKSSDKPRKNKKYYENA
PAAKRKRKPKKR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagataaaatacgctattttaacgataagcttctttcttatatgaaagatgaagcc
tataaaccgttaactgttcaagagctcgaggaagcacttgggattgaagattcattagat
ttcaaggattttgtcaaagcacttgtgaaaatggaagaaaagggaagcgtgattcgaaca
cggaataaccgttatggactgccgcaaaaaatgaatctcatccgaggtaagctttcaggg
caccctaagggctttgcatttgtaacgcctgatgagccggctggtgtggatgatattttt
attccccctaatgaaacaaaaaatgctatgcacggagatattgttcttgtgagagtctct
tcagaaagttcgggctcacgcagagaaggttctgttgaaaagattattgatcgtggaatt
aaagaagttgtgggtacgtattctgaaagtaaaaattttggatttgtaattccagatgat
aagaaaatagccaacgatattttcattccgaaaaatgtgtctcgtggagctgtagaggga
cataaggttgttgtaagattgacctcctatccagaaggacggacaagcgctgaaggagaa
gttttacaaattcttggtcataaaaatgatccaggtgttgatattctatccgttattcat
aagcatggtctgccaatggagtttccagaggatgtacttaaccaagcaaatgaagtgcct
gatacgattgaggaaagcgatatcggtaatcgacgtgatcttcgcggagaaacactcgtc
actattgatggtgcggatgcgaaagatctagatgatgcagttaccgttactaagcttgac
aatggcaattataagctgggcgttcatattgcggacgtcagccattatgtaacagaaaac
tcaccacttgaccgtgaagcgttcgaacgggcaacgagtgtgtatttagttgaccgagta
attccgatgattcctcatcgcttatccaatggtatttgttcgttaaatccacaggttgac
cggtttaccctttcatgtgagatggagtttgatgcaaaagggaaagtggttaatcatgat
atctttgaaagtgtgattcgaacaactgagagaatgacatataatgatgttaaaaaaatt
cttgtcgacaaagatgaagaattattagaacgttacgaaccgcttgtcccaatgttccag
caaatggaggagctcgctgccattctgcgtatgaaacggatggaacgcggtgcaattgat
tttgactttaaagaagcgaaaattctggttgatgacgaaggtcacccaacagaagtagtt
gttcgtgaacgttcagttgctgaacgcttgattgaagaatttatgctggctgccaatgaa
acagtggcggaacatttcttccgtcttaaggtgccattcctttaccgtattcatgaggat
cctaaagaagaaaaactgcagcgattcttcgattttattacgaattttggatatgtaatc
agaggatcagccagctcgattcaaccgaaagctttacagcagattattgaagcggttgct
gggaaaccagaagagatggttatttcaacggttatgcttcgatccatgcagcaagcaaaa
tacgatccggaaagcctaggacactttggtttatcaacggaattttatacacatttcact
tcgcctattcgccggtatccggatttaattgtccaccgtttgattcggacgtatttgatt
gaaggaaaccaaagtgaagcgactaaagcaaaatgggacgcaatgcttcctgaaatagct
gatcatacgtctaaacgtgaacgtcgtgctgttgatgctgaacgtgaaacagatgatctg
aaaaaagcagagtacatgcttgataagattggtgaagagtttgacggtattattggttct
gttaccaattttggaatgtttgttgagcttccaaataccattgaaggattggttcatgtc
agtgcgatgacagatgactattaccgatttgatgaacgtcagcttgccatgataggtgaa
cggaccggtaaagtatttagaatcggtgacgaaatctcaatccgcgtagctaatgtgaat
aaagaagaacgtgctgttgacttcgaaattttaggaatggtcaatagtcgaccgcgtacc
tctggaagtaagcagattttcaaggctaatcctgatggcacgaatagacgccgcaaggat
agtggtggaagcagtgatcgaaaaggaagcggaaacggtcaaggaagcggacgtaacgct
aaaaatggagctaagtcttctgataagccgcggaaaaacaaaaagtattatgaaaatgca
cccgcagcgaagcggaaaagaaaacctaaaaagagataa
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