Psychrobacillus psychrotolerans: ACN6MU_12690
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Entry
ACN6MU_12690 CDS
T11373
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppst Psychrobacillus psychrotolerans
Pathway
ppst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACN6MU_12690 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppst03021
]
ACN6MU_12690 (rho)
03019 Messenger RNA biogenesis [BR:
ppst03019
]
ACN6MU_12690 (rho)
Transcription machinery [BR:
ppst03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACN6MU_12690 (rho)
Messenger RNA biogenesis [BR:
ppst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACN6MU_12690 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA
ATPase_2
AAA_22
NACHT
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XQA36533
LinkDB
All DBs
Position
complement(2443062..2444345)
Genome browser
AA seq
427 aa
AA seq
DB search
MTQTTINELENMTLKELYTLARKFKVAAYSKLSKKELIFAILKSRAEQEGFFFMEGVLEI
IQQEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVTGKVRPPKESERYYGLLHVEL
VNGEDPEVAKERVHFPGLTALYPDRHIKLETDPEKLSTRIMDLVAPVGYGQRGLIVAPPK
AGKTLLIKEIANAITTNHPNAELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRSLAERRIFPAIDIR
RSGTRKEELLIPKEQLDKLWAIRKTFSDSSDFGERFLRKLRQTKTNEGFFEQLAVEMKAH
KSGKVSL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaacaacaattaatgagttagaaaacatgactctgaaagaactatatacactt
gcgcgaaaatttaaagtagccgcatatagcaaactttcaaaaaaagaacttatttttgca
atcttaaaatctcgtgcggaacaagaaggatttttcttcatggaaggcgtacttgaaatt
attcaacaagagggcttcggtttcttacgcccgattaactattcacctagttcagaggat
atttacatctccgcttctcaaataagaaggtttgaccttcgtaacggagacaaagtaaca
ggaaaagtgcgaccaccaaaagaaagtgaacgctattatggcctgttacatgttgaattg
gtcaacggcgaagaccctgaagtagcaaaggaaagagttcattttcctggactaaccgct
ttatatcctgatcgtcatatcaaattagaaacggatcctgagaaactatcgactcgtatc
atggacttggtagcaccagttggttatggtcaacgtggattaatagtagcgccaccaaaa
gctggtaaaacattacttattaaagaaattgctaacgcaataactacgaatcatccaaat
gcggaactaattgttttattaatagatgagcgtccagaggaagtaactgatattgagcgt
tcggttaaagcagatgtagtgagttctacatttgatgaagttccagaaaatcatgtaaaa
gtggctgagcttgtactggaaagagcaatgcgattagttgaacataaacgcgacgttatt
attttgatggattcaattacccgtttagctcgtgcttacaacttagttattccaccaagc
ggtcgtacactatcaggtggtattgatcctgctgctttccatcgtccaaaacgattcttc
ggagcagctcgtaatatcgaagaaggtggcagtttaacaattcttgccacggcattagtc
gatacgggatcaagaatggacgaagtaatctatgaggaatttaaaggaactggtaattta
gaacttcacttagacagaagccttgcagagcgtcgtatcttcccagcgatcgatattcgt
cgttcaggaacaagaaaagaagaattacttataccgaaagagcagttggacaaactttgg
gcgatacgtaaaaccttctcggattcatctgattttggagaacgcttcttaagaaagctt
cgccaaaccaaaacaaatgaaggattctttgaacaacttgctgtagaaatgaaagcgcat
aaaagtggtaaagtttcactataa
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