Planktothrix pseudagardhii: NO713_00144
Help
Entry
NO713_00144 CDS
T08299
Symbol
crhR
Name
(GenBank) RNA helicase CrhR
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppsu
Planktothrix pseudagardhii
Pathway
ppsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NO713_00144 (crhR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsu03019
]
NO713_00144 (crhR)
03009 Ribosome biogenesis [BR:
ppsu03009
]
NO713_00144 (crhR)
Enzymes [BR:
ppsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NO713_00144 (crhR)
Messenger RNA biogenesis [BR:
ppsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NO713_00144 (crhR)
Ribosome biogenesis [BR:
ppsu03009
]
Prokaryotic type
rRNA helicases
NO713_00144 (crhR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrD-helicase
AAA_19
HEM4
Cas3-like_C_2
AAA_22
Flavi_DEAD
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
CAD5912674
UniProt:
A0A9W4CGV9
LinkDB
All DBs
Position
I:complement(191971..193374)
Genome browser
AA seq
467 aa
AA seq
DB search
MSPSFASLGISEERASYLETIGFTEPTAIQVEAIPHILSGRDVVGLAQTGTGKTAAFSLP
ILEQLDTSAKGVQALILTPTRELAMQVKEAIRKMTDDRSLYVLTVYGGQSIERQIQRLQQ
GVQIVVGTPGRILDLLNRGDLKLNRIKWLVLDEADEMLSMGFIQDVEKILESVAEERQTA
FFSATMEPSIWKLVKKFLKNPVTIKAENPKATPKRIEQRAYMAPRGWSKARALQPILELE
DPESAIIFVRTKQAAAELTTFLQSAGHSVDEYHGNLNQAQRERLLQRFRRRQVRWIVATD
IAARGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGRDGIAITLIQPIDRRKLRLIERH
LRHNFTVLSIPKRSQIEARYIERLQGRVREALSGERVASFLPIVAQLGEEYDPHAIAAAA
LQLAYDQTRPSWLDSDFDAPEEEAQLVTSKPKLNRRISRPSVSQGVE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgagtccatcttttgcaagcttaggaatttccgaagaacgagcgagttatctggaaaca
ataggctttactgaaccaaccgccattcaagtcgaagcaattccccatatattgtctgga
cgtgatgtggtgggactggctcaaaccgggacgggcaaaacagccgccttctcattgccc
attctggagcaactagacacaagtgcgaaaggcgtacaagcgttaatcctgaccccaact
cgtgagttggccatgcaagttaaagaagcgattcggaaaatgaccgatgatcgcagcttg
tatgtgttaaccgtatacggcggtcagtccattgagcgacaaattcaacgcttacaacaa
ggcgttcaaattgtggtggggacaccgggacggattttagatttactcaatcgcggcgat
ctaaaattaaaccggattaagtggttagtgttggatgaagccgatgaaatgttaagcatg
ggctttattcaagatgtggaaaaaattcttgaatctgtagcggaagaacgtcaaacggcg
tttttctctgcgacgatggagccttcgatttggaaactggtgaagaaattcctgaaaaat
ccagtcaccattaaagccgaaaatcccaaagccactcccaaacgcattgaacagcgtgct
tatatggccccgcgtggctggtcaaaagcccgggcgttgcaaccgattttagaattagaa
gatccagaatcggcgattatttttgtccgcacaaaacaagccgctgcggaattaaccaca
ttcctgcaatcggcgggtcatagtgtggatgaatatcatggcaacttgaaccaagcccaa
cgggaacgactgctgcaacgcttccgccgtcgtcaagtgcggtggattgtggctaccgac
attgcagcacgaggattagatgtggatcatcttacccacgtcattaactacgatttaccc
gataacgcggaaagttatgttcaccgcattggtcggacaggtcgcgccggacgggatggg
attgcgattacgctgattcaaccgattgatcgccggaaactgcggttaatcgagcgtcat
ttgcgccataactttacggtgttatccattcctaagcgctcgcaaattgaagcccgttat
attgaacgtctgcaaggacgggtgcgggaagcgttatccggtgaacgggtggcatctttc
ttgccgattgtggcgcaattgggtgaggaatacgatcctcatgcgatcgccgccgccgcc
ttacaactggcctacgatcaaactcgtcccagttggctagattctgactttgatgctccg
gaggaagaagctcaattagtgacttctaaacctaaattaaaccgtcggatttctcgtccc
tcggtgtctcaaggcgttgaataa
DBGET
integrated database retrieval system
