Persicobacter psychrovividus: PEPS_04900
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Entry
PEPS_04900 CDS
T09740
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppsv
Persicobacter psychrovividus
Pathway
ppsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEPS_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsv03019
]
PEPS_04900
03400 DNA repair and recombination proteins [BR:
ppsv03400
]
PEPS_04900
Enzymes [BR:
ppsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEPS_04900
Messenger RNA biogenesis [BR:
ppsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEPS_04900
DNA repair and recombination proteins [BR:
ppsv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEPS_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
RecQ-1-like_HTH
DEAD
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
BDC98209
LinkDB
All DBs
Position
complement(551967..554012)
Genome browser
AA seq
681 aa
AA seq
DB search
MPTGAGKSLCYQLPALLLDGTAIVISPLIALMKNQVDQLNALGVSAYMLNSTLTKGEMNK
VKKKVLEGEARLLYVAPESLTKEENVAFLKEAKISFVAIDEAHCISEWGHDFRPEYRRIR
TIITQFGDLPIIALTATATPKVQLDIQRNLGLEEANLFKSSFNRENLYYEVRPKKGIDKQ
LIKFILDHKGQAGIIYCLSRKKVEEVANLLKVNGIKAAPYHAGLESGMRVKNQDDFLNED
LEVIVATIAFGMGIDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLDGHCLLFYSYNDIV
KLEKFNKDKPVTERENAKMLLDEVASFSESAVCRRKQLLHYFGEHMEEDCGFCDNCKHPK
DRFNAQDQIQIAVKTALMTSERFGINHLVSVVRGSQNQYVLSYEHDKLPIYGLGKEDDDE
HWKNIFRAAMIHQLLDKDIDNYGVLKVTELGKKFIDEPHEILVPLGHDYRNESEEEDLPT
INVKAHDKVLFAQLVALRKEVAKTKGVPPYVVFSEPALEEMAIIYPTSMESLLQVQGVGQ
GKARKFGKPFLSLIEKYVAENDIETADEVTVKTAGDRSKDKIFIIQQIDRKVNLDELAEG
RSWDFFQLLEEMEHICFSGTKLNIDYFIEEIMDEEMQSDIQEYFMGAETDNIETALDELG
EDYAEDEIRLMRIKIYTDLAN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaggagccggtaaatcactttgttaccagcttcctgccctacttttggacggt
actgctattgttatcagcccgctgattgcactgatgaaaaaccaggttgatcaactcaat
gctttgggcgtttccgcttacatgctcaactccaccctgaccaaaggggagatgaacaag
gtaaagaaaaaagttttagagggtgaagcgcgtttgttatatgtggcaccagaatcactg
accaaggaagagaatgtcgcttttttgaaagaggcaaaaatttcttttgtagccattgat
gaagcccactgtatttcagaatgggggcatgacttccgaccggaatatcgtcgaattcga
acaatcatcactcagtttggtgatttacccattattgcgctcacggccacggccacccca
aaagtgcagctggatattcagcgtaacctcgggcttgaggaagctaacctgttcaaatct
tcctttaaccgcgaaaatctttattatgaggttcgcccgaaaaaaggaatcgacaagcaa
ctgataaaatttatccttgaccacaaagggcaggcagggattatttactgtctgagccgt
aaaaaagtggaagaggttgccaatttactgaaagtgaacggcattaaggcagcgccatac
catgcaggtctggagtctggaatgcgggtaaaaaatcaggatgattttctaaatgaagat
cttgaagtgattgtagcgaccattgcttttggtatggggatcgacaaacccgatgtgcgg
tttgtcattcactacgacgccccaaaatcactggaaggttattatcaggaaacgggacgt
gcaggtcgcgatggcctcgatgggcattgtctgcttttctacagttataacgacattgta
aaactcgaaaaattcaacaaagacaagccagttaccgagcgggagaacgcaaagatgctc
ctggatgaagtggcttccttttcagaatctgccgtatgtcgacgcaaacagttgctccac
tattttggagaacatatggaggaagattgtggcttttgtgacaattgtaagcacccgaaa
gatcgtttcaatgcacaggatcaaattcagatagctgtaaaaacagccctgatgaccagc
gagcgtttcggcatcaaccatttggtgtccgttgttcgaggttcacaaaatcagtatgtc
ctcagttacgaacatgacaagctgccaatttatggtctgggaaaagaagatgatgatgag
cactggaaaaatatcttccgtgcggcgatgattcatcagcttctggataaagatattgac
aattatggggtactgaaggttaccgagctcggtaaaaaattcattgacgaaccacacgag
atccttgttccccttgggcacgattaccgcaacgaaagtgaagaagaggatctgccgacc
atcaatgtaaaagcgcacgataaggttctttttgcgcaattggtcgcccttcgaaaagaa
gtagccaaaaccaaaggggtgcctccttatgtggttttttcagagccagcacttgaagag
atggccatcatctatcccacctccatggaaagccttttgcaggttcagggagtggggcaa
ggcaaagcacgcaagttcggaaaaccgttcctgagcctgatagaaaaatacgtcgctgaa
aacgacattgaaactgccgatgaagtaacggtaaaaacggctggtgaccgttctaaagat
aaaatttttatcattcagcaaatcgaccgtaaggttaatctcgatgagcttgctgaagga
agaagctgggatttcttccagctattggaagaaatggagcacatttgtttttctggaacg
aagctgaacatcgattatttcattgaggaaatcatggatgaagaaatgcaaagcgatatt
caggaatattttatgggcgctgaaacggacaatatcgaaaccgcactcgatgaactggga
gaagattatgccgaagacgaaatccgcttgatgcgcattaagatttacacggacttagca
aattaa
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